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hypothetical_protein_MPVG_00141

Euk-Vir

Micromonas_pusilla_virus_12T

hypothetical_protein_MPVG_00141__YP_007676206__Micromonas_pusilla_virus_12T__755272

Identity

Accession:
YP_007676206 ↗
Protein ID:
hypothetical_protein_MPVG_00141
Kingdom:
euk

Quality

75.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Micromonas_pusilla_virus_12T

TaxID: 755272

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 144-189
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.93 74.0 5.51e-01 84.8% 37.9%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.92 63.0 4.40e-01 76.1% 25.4%
6jlzA01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.87 63.0 4.63e-01 80.4% 32.4%
1fcqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.86 76.0 4.51e-01 100.0% 15.0%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.85 68.0 6.22e-01 89.1% 66.7%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.85 77.0 6.62e-01 100.0% 70.0%
2x9qB00 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.84 69.0 4.37e-01 95.7% 18.9%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.84 57.0 5.10e-01 76.1% 51.6%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 67.0 5.70e-01 87.0% 63.4%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.82 56.0 4.66e-01 78.3% 41.8%
7cyuA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.79 55.0 5.12e-01 80.4% 59.6%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 67.0 5.71e-01 93.5% 72.2%
2qvwA04 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.76 64.0 4.52e-01 95.7% 32.4%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.76 57.0 4.54e-01 82.6% 39.2%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.76 52.0 4.80e-01 78.3% 55.7%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.75 52.0 3.17e-01 73.9% 14.1%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 66.0 5.18e-01 97.8% 51.1%
1kl7A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.74 52.0 3.27e-01 76.1% 13.5%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.74 65.0 4.55e-01 100.0% 33.3%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.71 57.0 3.41e-01 84.8% 13.1%
3gagA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.71 58.0 3.82e-01 95.7% 33.5%
3veaA02 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.69 50.0 4.80e-01 76.1% 82.7%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 52.0 3.26e-01 87.0% 14.9%
2p0tA02 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.66 46.0 4.08e-01 82.6% 48.6%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.65 49.0 4.03e-01 84.8% 43.3%
3pe8A00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.64 51.0 3.35e-01 91.3% 60.7%
4kd6A00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.62 50.0 3.29e-01 91.3% 61.9%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.55 43.0 3.31e-01 89.1% 37.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3685507 109.2.1.39 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Ldi 0.97 72.0 4.06e-01 78.3% 8.8%
3924147 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.90 63.0 4.92e-01 78.3% 37.8%
3970007 3502.1.1.0 ↗ alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein 0.89 61.0 5.08e-01 76.1% 44.0%
4061431 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.88 62.0 6.02e-01 78.3% 68.0%
3503648 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.87 61.0 5.54e-01 78.3% 56.7%
3945297 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.87 77.0 4.93e-01 100.0% 22.4%
3620454 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.85 58.0 3.95e-01 78.3% 22.0%
3426642 375.1.1.96 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY 0.84 62.0 6.02e-01 84.8% 72.0%
3483536 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.83 74.0 5.42e-01 100.0% 42.5%
3619546 3712.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.83 74.0 6.60e-01 100.0% 80.0%
4271175 101.1.2.498 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25870 0.81 62.0 4.29e-01 82.6% 27.4%
3870636 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 61.0 5.31e-01 82.6% 56.9%
3222769 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.78 54.0 3.20e-01 78.3% 10.0%
4863395 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.76 60.0 5.15e-01 87.0% 90.4%
3741476 101.1.2.527 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 0.75 56.0 4.43e-01 84.8% 50.0%
3988033 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.71 64.0 4.20e-01 100.0% 42.2%
3536512 192.29.1.100 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4211 0.71 60.0 4.14e-01 93.5% 94.7%
3999153 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.65 54.0 4.25e-01 91.3% 55.0%
D2 medium residues 16-98
PDB
Domain cluster: rep: hypothetical_protein_BST79_gp244__YP_009325762__Only_Syngen_Nebraska_virus_5__1917232__D24-92
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19150.6 best DUF5832 86.6 1.60e-24 77.1% 81.5%