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hypothetical_protein_ManeNPV_00113

Euk-Vir

Malacosoma_neustria_nucleopolyhedrovirus

hypothetical_protein_ManeNPV_00113__YP_009552249__Malacosoma_neustria_nucleopolyhedrovirus__38012

Identity

Accession:
YP_009552249 ↗
Protein ID:
hypothetical_protein_ManeNPV_00113
Kingdom:
euk

Quality

81.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-131
PDB
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.74 44.0 5.40e-01 84.8% 93.6%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.74 42.0 5.23e-01 77.6% 91.0%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.72 41.0 4.85e-01 76.0% 81.4%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.67 48.0 5.45e-01 79.2% 100.0%
2e8yA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 42.0 4.57e-01 88.0% 77.2%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 42.0 4.96e-01 76.0% 98.9%
1ie0A00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.61 45.0 4.24e-01 78.4% 67.3%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.61 52.0 4.88e-01 93.6% 90.3%
6c98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 4.66e-01 89.6% 94.5%
1j6wA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.60 45.0 4.18e-01 79.2% 67.1%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 37.0 4.16e-01 72.8% 81.7%
1h3gA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 38.0 4.38e-01 92.8% 92.2%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 41.0 4.32e-01 96.8% 80.2%
1c16A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 4.28e-01 89.6% 90.7%
2v94B00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 39.0 4.49e-01 81.6% 97.8%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 38.0 4.14e-01 80.8% 85.4%
1xzpB00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.55 38.0 3.79e-01 70.4% 72.5%
1ywxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 39.0 4.47e-01 84.8% 100.0%
4qjvA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.54 34.0 3.92e-01 88.0% 87.6%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 4.09e-01 89.6% 93.5%
2vzsA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 4.24e-01 89.6% 93.1%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 39.0 2.89e-01 76.8% 91.2%
1dj0A01 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.53 41.0 3.98e-01 80.8% 91.3%
5optY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.97e-01 83.2% 77.2%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.92e-01 71.2% 86.2%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.99e-01 80.8% 84.8%
1ex0A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.95e-01 85.6% 90.5%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.53 42.0 4.33e-01 96.0% 90.0%
2oxgC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 4.19e-01 92.8% 93.1%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 4.03e-01 94.4% 82.6%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.52 36.0 2.86e-01 71.2% 77.6%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 4.33e-01 99.2% 91.1%
2ednA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.86e-01 90.4% 81.4%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3405606 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.71 42.0 3.49e-01 80.0% 33.2%
3216247 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.71 47.0 5.48e-01 76.8% 94.4%
3389168 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.70 43.0 3.61e-01 80.0% 37.1%
4278681 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.70 41.0 4.89e-01 76.0% 85.9%
4629425 11.1.1.1369 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1410 0.70 48.0 5.44e-01 88.0% 92.6%
3802051 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 50.0 5.57e-01 98.4% 98.9%
4942630 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 50.0 5.56e-01 89.6% 95.0%
4638448 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.68 45.0 4.82e-01 76.8% 79.0%
4144850 11.1.1.1257 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29761 0.66 49.0 5.41e-01 95.2% 95.0%
3609057 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 51.0 4.88e-01 81.6% 86.9%
3250947 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 49.0 5.13e-01 96.8% 87.0%
3243970 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 48.0 5.22e-01 87.2% 97.0%
3994715 11.1.1.430 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP-delta 0.64 44.0 5.04e-01 87.2% 100.0%
4209527 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.63 44.0 4.63e-01 76.8% 80.9%
5001586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 43.0 4.87e-01 87.2% 97.8%
3260183 11.1.1.701 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_SIBA-E_3rd 0.62 44.0 3.18e-01 74.4% 27.2%
4079417 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.62 44.0 4.55e-01 78.4% 79.1%
5036163 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 49.0 5.10e-01 96.8% 93.0%
4981697 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 4.63e-01 93.6% 88.0%
3402635 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.61 49.0 4.77e-01 86.4% 78.5%
3172159 1.1.7.44 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift 0.60 46.0 4.78e-01 88.0% 87.8%
3982237 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 38.0 4.46e-01 77.6% 94.1%
3716385 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 53.0 5.14e-01 98.4% 92.9%
3705019 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 45.0 4.40e-01 80.8% 99.3%
3599398 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.58 39.0 4.31e-01 80.8% 86.0%
160389 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.58 40.0 4.04e-01 72.0% 70.7%
4932427 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.58 39.0 4.42e-01 74.4% 94.4%
3851512 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.58 41.0 3.99e-01 89.6% 66.7%
5040781 304.109.1.4 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.57 40.0 4.61e-01 81.6% 96.8%
3569205 11.1.1.419 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3694 0.57 46.0 3.91e-01 86.4% 66.0%
3299946 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.56 46.0 4.77e-01 88.8% 93.9%
4062015 304.8.1.53 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.56 41.0 3.85e-01 84.0% 61.3%
4219826 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.56 46.0 3.75e-01 89.6% 73.4%
4400928 1.1.7.10 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.56 46.0 4.64e-01 88.0% 98.4%
2137681 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.56 38.0 4.07e-01 70.4% 80.7%
4487427 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 41.0 4.12e-01 86.4% 76.8%
3264091 11.1.1.1038 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SIBA-E_N, Ig_SIBA-E_2nd 0.55 46.0 3.82e-01 93.6% 50.2%
3540643 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 4.17e-01 72.8% 85.7%
3194095 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.55 30.0 3.44e-01 77.6% 70.5%
3968097 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.54 37.0 3.88e-01 72.0% 78.2%
4672169 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.54 44.0 3.60e-01 88.8% 72.2%
3592492 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.54 38.0 3.86e-01 80.8% 73.6%
3494959 11.1.5.27 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep 0.53 38.0 3.51e-01 75.2% 80.6%
3575535 1.1.7.113 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11, AAA_12 0.53 44.0 2.98e-01 90.4% 74.0%
4158620 11.1.1.72 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NEAT 0.52 40.0 3.94e-01 94.4% 74.8%
3517182 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 4.08e-01 89.6% 91.3%
3350908 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.52 43.0 3.46e-01 92.0% 84.4%
3232212 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 34.0 3.77e-01 88.0% 85.3%
5043717 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 4.10e-01 97.6% 96.8%
3614425 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.52 47.0 3.81e-01 98.4% 92.6%
3715555 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 37.0 3.94e-01 83.2% 87.0%
4599006 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.52 39.0 4.03e-01 92.8% 82.5%
4946999 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.51 45.0 3.74e-01 94.4% 91.2%
3511282 11.1.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida 0.51 39.0 3.84e-01 80.8% 93.3%
3922080 11.1.1.609 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NTCP5_P3_N 0.51 40.0 4.15e-01 91.2% 91.3%
3401923 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.51 38.0 4.05e-01 89.6% 90.0%
3250716 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.50 35.0 3.84e-01 72.0% 97.1%
3704413 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 44.0 3.11e-01 96.8% 47.2%
4253790 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.50 44.0 3.62e-01 96.8% 86.3%
3936465 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.50 40.0 3.90e-01 88.8% 77.0%