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hypothetical_protein_McnAVgp030

Euk-Vir

Mamestra_configurata_nucleopolyhedrovirus_A

hypothetical_protein_McnAVgp030__NP_613113__Mamestra_configurata_nucleopolyhedrovirus_A__207830

Identity

Accession:
NP_613113 ↗
Protein ID:
hypothetical_protein_McnAVgp030
Kingdom:
euk

Quality

77.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Mamestra_configurata_nucleopolyhedrovirus_A

TaxID: 207830

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-39_53-162
PDB
Domain cluster: rep: ORF099__YP_009121884__Spodoptera_frugiperda_granulovirus__307454__D9-147
D2 medium residues 163-214
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hf1A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.73 47.0 4.61e-01 73.1% 61.8%
3s8iA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.71 50.0 3.79e-01 75.0% 97.6%
5cxmA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.64 48.0 3.96e-01 82.7% 58.6%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 48.0 2.99e-01 84.6% 24.0%
1l5jA02 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.64 49.0 3.31e-01 84.6% 82.0%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.63 49.0 4.54e-01 86.5% 98.5%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 34.0 4.02e-01 75.0% 81.8%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.62 48.0 3.06e-01 90.4% 26.1%
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 38.0 4.29e-01 75.0% 85.7%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.61 47.0 3.01e-01 88.5% 43.9%
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 37.0 4.19e-01 71.2% 91.2%
2gb5A01 3.90.79.20 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › 0.59 43.0 3.31e-01 80.8% 93.2%
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.59 40.0 3.85e-01 71.2% 68.9%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 44.0 2.77e-01 82.7% 93.4%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 33.0 3.82e-01 75.0% 93.3%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 45.0 4.04e-01 84.6% 68.1%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 45.0 2.95e-01 92.3% 20.0%
2aklA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 43.0 4.59e-01 92.3% 100.0%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 42.0 2.71e-01 86.5% 20.4%
4jgjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.37e-01 80.8% 89.2%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 41.0 3.58e-01 86.5% 63.0%
3r45C00 6.10.250.2320 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 30.0 2.89e-01 80.8% 44.3%
3mhsA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 38.0 3.00e-01 78.8% 40.2%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.54 41.0 3.40e-01 90.4% 50.5%
3siqA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.54 40.0 3.32e-01 86.5% 41.7%
3iylW04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 41.0 2.73e-01 92.3% 19.7%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 39.0 3.87e-01 78.8% 98.2%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 36.0 2.95e-01 73.1% 40.4%
3bdwA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 34.0 2.75e-01 71.2% 58.5%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 38.0 2.84e-01 96.2% 57.9%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991697 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.73 51.0 3.91e-01 73.1% 42.1%
5059873 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.71 41.0 3.05e-01 73.1% 22.2%
3983892 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.70 49.0 3.72e-01 73.1% 42.6%
3663342 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.69 46.0 4.71e-01 82.7% 72.0%
4929903 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.69 48.0 3.77e-01 73.1% 44.8%
4282792 375.1.1.44 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-NADH-PPase 0.68 44.0 4.96e-01 71.2% 100.0%
5073855 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.68 48.0 3.54e-01 73.1% 36.2%
3506351 375.1.1.44 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-NADH-PPase 0.68 44.0 5.03e-01 78.8% 100.0%
3628498 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.68 38.0 3.47e-01 75.0% 41.4%
5062906 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 44.0 4.26e-01 76.9% 58.3%
4981579 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.68 44.0 4.88e-01 78.8% 87.5%
3935829 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.67 38.0 3.69e-01 75.0% 49.2%
4982096 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 40.0 4.58e-01 75.0% 100.0%
4588738 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.67 46.0 3.91e-01 73.1% 56.5%
3794324 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 39.0 3.48e-01 76.9% 44.3%
5055298 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 43.0 4.13e-01 73.1% 61.7%
3514931 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 42.0 4.56e-01 82.7% 90.0%
3666644 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.63 39.0 4.46e-01 80.8% 91.4%
4945723 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 47.0 3.79e-01 80.8% 47.0%
3486200 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 47.0 2.83e-01 86.5% 21.8%
3665481 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.62 38.0 4.05e-01 76.9% 71.1%
3417232 63.1.1.0 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.62 48.0 3.75e-01 86.5% 98.3%
3758626 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.62 43.0 4.05e-01 76.9% 56.9%
4379683 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.62 40.0 2.70e-01 78.8% 15.9%
3589899 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 38.0 4.01e-01 76.9% 68.9%
2722273 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.61 39.0 3.83e-01 80.8% 58.6%
4227538 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.61 44.0 4.35e-01 78.8% 89.1%
3293816 2.1.1.81 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.61 43.0 3.63e-01 75.0% 58.9%
4056467 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 46.0 4.42e-01 86.5% 75.0%
3980811 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.60 45.0 4.41e-01 86.5% 75.0%
3385436 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 45.0 2.96e-01 86.5% 18.3%
3819668 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.59 40.0 4.21e-01 75.0% 100.0%
3974544 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 43.0 4.33e-01 86.5% 80.0%
4437923 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 2.75e-01 78.8% 20.0%
4367584 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 44.0 2.64e-01 90.4% 11.4%
4477670 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.57 43.0 2.87e-01 86.5% 19.2%
4223427 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 43.0 2.82e-01 86.5% 17.3%
3262703 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 41.0 4.16e-01 84.6% 82.0%
4338996 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.56 43.0 4.14e-01 86.5% 76.7%
4576422 375.1.1.84 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_15 0.56 45.0 4.10e-01 86.5% 80.0%
4263366 2004.1.1.219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PriA_CRR 0.56 43.0 2.90e-01 90.4% 21.6%
4989647 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.56 38.0 3.81e-01 73.1% 65.5%
4287145 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.56 40.0 3.87e-01 76.9% 66.7%
4265821 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.56 42.0 2.80e-01 86.5% 18.4%
4982959 3922.1.1.357 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auto_anti-p27 0.56 39.0 3.34e-01 98.1% 41.0%
3620992 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.54 35.0 3.57e-01 78.8% 66.0%
3200288 192.20.1.0 ↗ alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD 0.53 38.0 2.93e-01 76.9% 35.1%
4929178 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.51 37.0 2.63e-01 84.6% 37.6%
4270967 101.1.1.107 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.50 39.0 3.07e-01 86.5% 54.5%