hypothetical_protein_MuHV1_gp053

Euk-Vir

Murid_betaherpesvirus_1

hypothetical_protein_MuHV1_gp053__YP_214061__Murid_betaherpesvirus_1__10366

Identity

69.0 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Muromegalovirus› Murid_betaherpesvirus_1

TaxID: 10366

View cluster (19 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-92

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17086.11 best	HV_small_capsid	53.4	3.70e-14	100.0%	76.6%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5cbgA00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.64	43.0	3.60e-01	70.2%	100.0%
2d6fC03	1.10.150.380	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › GatB domain, N-terminal subdomain	0.61	46.0	4.76e-01	100.0%	94.2%
1u9lB00	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.60	43.0	4.06e-01	98.2%	62.9%
4s3mB02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.60	41.0	3.44e-01	73.7%	87.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3278774	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.60	50.0	4.19e-01	98.2%	62.9%
3724024	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.57	38.0	3.27e-01	70.2%	57.4%
3328693	239.3.1.0 ↗	beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain	0.55	38.0	3.21e-01	73.7%	72.4%