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hypothetical_protein_NeseNPV_gp48
Euk-VirNeodiprion_sertifer_nucleopolyhedrovirus
hypothetical_protein_NeseNPV_gp48__YP_025155__Neodiprion_sertifer_nucleopolyhedrovirus__111874
Identity
- Accession:
- YP_025155 ↗
- Protein ID:
- hypothetical_protein_NeseNPV_gp48
- Kingdom:
- euk
Quality
82.9
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Gammabaculovirus›
Neodiprion_sertifer_nucleopolyhedrovirus
TaxID: 111874
Cluster
View cluster (40 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-106_165-172
Domain cluster:
rep: Ac81-like_protein__YP_010087716__Homarus_gammarus_nudivirus__2509616__D9-89
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05820.18 best | Ac81 | 104.5 | 5.90e-30 | 97.2% | 58.0% |
D2
high
residues 123-163
Domain cluster:
representative
CATH (51)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4di1C02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.97 | 88.0 | 8.82e-01 | 97.6% | 97.6% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.95 | 87.0 | 5.87e-01 | 100.0% | 30.8% |
| 4jvtA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.94 | 83.0 | 8.37e-01 | 97.6% | 97.6% |
| 4jfcA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.93 | 81.0 | 7.19e-01 | 95.1% | 73.2% |
| 4fzwA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.90 | 77.0 | 6.82e-01 | 95.1% | 70.7% |
| 2hw5A02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.89 | 77.0 | 6.85e-01 | 95.1% | 71.9% |
| 4jylA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.88 | 75.0 | 7.11e-01 | 95.1% | 83.7% |
| 4mi2A02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.88 | 75.0 | 6.68e-01 | 95.1% | 70.7% |
| 1jxzC02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.87 | 76.0 | 6.68e-01 | 97.6% | 68.3% |
| 4og1A02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.87 | 74.0 | 6.60e-01 | 95.1% | 70.7% |
| 3hpcX00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.86 | 75.0 | 4.95e-01 | 100.0% | 25.8% |
| 3swxA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.86 | 72.0 | 6.44e-01 | 95.1% | 70.7% |
| 4jcsA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.85 | 71.0 | 6.25e-01 | 95.1% | 66.1% |
| 5z7rA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.84 | 69.0 | 6.47e-01 | 95.1% | 78.8% |
| 3nrwA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.83 | 70.0 | 5.25e-01 | 97.6% | 38.5% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.83 | 70.0 | 6.63e-01 | 100.0% | 80.4% |
| 1dciA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.82 | 66.0 | 5.82e-01 | 95.1% | 60.3% |
| 2j5iA02 | 6.10.250.2850 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.81 | 64.0 | 6.52e-01 | 92.7% | 100.0% |
| 4nqiD00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.80 | 68.0 | 4.25e-01 | 100.0% | 17.7% |
| 5tw1D01 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.79 | 67.0 | 4.60e-01 | 100.0% | 95.9% |
| 5kjpA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.78 | 64.0 | 5.82e-01 | 95.1% | 70.7% |
| 2xv4S03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 63.0 | 4.92e-01 | 95.1% | 41.3% |
| 4qfeK02 | 1.10.287.2460 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.78 | 57.0 | 5.99e-01 | 82.9% | 100.0% |
| 3rlfF01 | 1.20.58.370 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like | 0.78 | 65.0 | 5.22e-01 | 100.0% | 51.2% |
| 2xkoC02 | 6.10.250.870 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.78 | 60.0 | 6.25e-01 | 87.8% | 97.3% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.77 | 64.0 | 4.24e-01 | 95.1% | 32.3% |
| 4rflA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.77 | 64.0 | 4.18e-01 | 100.0% | 20.6% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 61.0 | 5.67e-01 | 100.0% | 73.2% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 65.0 | 5.67e-01 | 100.0% | 93.5% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.74 | 62.0 | 6.00e-01 | 97.6% | 97.9% |
| 1z5zA02 | 1.20.120.850 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain | 0.74 | 58.0 | 5.02e-01 | 100.0% | 53.9% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.73 | 60.0 | 4.34e-01 | 100.0% | 98.5% |
| 3qkaE02 | 1.10.287.2460 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 58.0 | 5.82e-01 | 95.1% | 90.7% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 60.0 | 5.43e-01 | 100.0% | 77.6% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.70 | 53.0 | 3.78e-01 | 82.9% | 66.9% |
| 1j30A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 60.0 | 4.14e-01 | 100.0% | 44.0% |
| 1vpdA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.68 | 52.0 | 3.65e-01 | 82.9% | 61.8% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.68 | 58.0 | 5.71e-01 | 100.0% | 97.8% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.67 | 58.0 | 3.56e-01 | 100.0% | 15.4% |
| 6fmhB01 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.66 | 56.0 | 3.72e-01 | 97.6% | 70.3% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.66 | 57.0 | 5.34e-01 | 100.0% | 86.3% |
| 5je8B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.66 | 46.0 | 3.31e-01 | 100.0% | 24.2% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.65 | 55.0 | 4.96e-01 | 100.0% | 67.8% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 54.0 | 4.53e-01 | 100.0% | 55.8% |
| 2qvaA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.65 | 54.0 | 5.04e-01 | 95.1% | 75.5% |
| 2qtfA02 | 6.10.250.2860 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 53.0 | 5.08e-01 | 92.7% | 78.7% |
| 3q18A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 54.0 | 4.01e-01 | 100.0% | 38.8% |
| 2yfkA02 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.64 | 51.0 | 3.41e-01 | 100.0% | 42.3% |
| 2x1lB02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.62 | 47.0 | 3.95e-01 | 85.4% | 46.1% |
| 2rklF00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.60 | 48.0 | 4.48e-01 | 95.1% | 76.9% |
| 1go3F02 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 43.0 | 4.17e-01 | 87.8% | 74.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3396684 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.95 | 87.0 | 5.54e-01 | 100.0% | 23.4% |
| 3653641 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.93 | 84.0 | 4.98e-01 | 100.0% | 15.2% |
| 997935 | 323.1.1.6 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf | 0.88 | 74.0 | 4.17e-01 | 92.7% | 9.6% |
| 3623989 | 323.1.1.6 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf | 0.85 | 75.0 | 4.97e-01 | 97.6% | 26.0% |
| 7521 | 323.1.1.6 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf | 0.85 | 71.0 | 4.04e-01 | 92.7% | 10.5% |
| 3539169 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.84 | 74.0 | 4.74e-01 | 100.0% | 22.2% |
| 3708341 | 323.1.1.6 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf | 0.84 | 74.0 | 4.16e-01 | 97.6% | 9.6% |
| 3414990 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.83 | 72.0 | 3.73e-01 | 100.0% | 2.4% |
| 3350214 | 165.1.1.2 ↗ | alpha duplicates or obligate multimers › Dimerisation interlock › SinR repressor dimerisation domain-like › SinR repressor dimerisation domain-like › RFC1 | 0.81 | 66.0 | 6.21e-01 | 90.2% | 74.0% |
| 4027497 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.79 | 62.0 | 5.59e-01 | 92.7% | 66.7% |
| 4106318 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.76 | 63.0 | 4.17e-01 | 100.0% | 25.1% |
| 4198348 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.76 | 62.0 | 4.49e-01 | 100.0% | 34.6% |
| 197868 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.75 | 61.0 | 5.82e-01 | 100.0% | 80.4% |
| 3512231 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.74 | 55.0 | 5.78e-01 | 87.8% | 100.0% |
| 4968652 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.74 | 62.0 | 4.59e-01 | 92.7% | 40.0% |
| 4552883 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.73 | 60.0 | 5.75e-01 | 95.1% | 89.8% |
| 4094168 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.72 | 59.0 | 4.63e-01 | 100.0% | 42.0% |
| 3448294 | 3826.1.1.33 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › eIF-4B | 0.72 | 60.0 | 4.86e-01 | 100.0% | 51.8% |
| 3527434 | 6006.1.1.6 ↗ | extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF27661 | 0.71 | 57.0 | 4.00e-01 | 100.0% | 25.8% |
| 5023716 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.71 | 58.0 | 4.25e-01 | 100.0% | 33.6% |
| 3990688 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.70 | 57.0 | 4.55e-01 | 100.0% | 44.2% |
| 3534156 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 60.0 | 4.74e-01 | 100.0% | 48.9% |
| 3484950 | 605.8.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like | 0.69 | 61.0 | 5.92e-01 | 100.0% | 97.8% |
| 3437734 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.67 | 57.0 | 4.89e-01 | 95.1% | 69.2% |
| 3738358 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.63 | 53.0 | 4.45e-01 | 100.0% | 54.7% |