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hypothetical_protein_OLNG_00081

Euk-Vir

Ostreococcus_lucimarinus_virus_OlV5

hypothetical_protein_OLNG_00081__YP_007674723__Ostreococcus_lucimarinus_virus_OlV5__754064

Identity

Accession:
YP_007674723 ↗
Protein ID:
hypothetical_protein_OLNG_00081
Kingdom:
euk

Quality

77.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_lucimarinus_virus_OlV5

TaxID: 754064

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-65
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f4qA01 3.30.66.10 Alpha Beta › 2-Layer Sandwich › Viral Topoisomerase I › DNA topoisomerase I domain 0.74 57.0 5.56e-01 100.0% 75.0%
1vccA00 3.30.66.10 Alpha Beta › 2-Layer Sandwich › Viral Topoisomerase I › DNA topoisomerase I domain 0.66 54.0 5.20e-01 98.4% 94.8%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 52.0 4.81e-01 90.6% 88.7%
1f5aA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 43.0 3.28e-01 73.4% 47.4%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 42.0 3.53e-01 71.9% 41.7%
2vldA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 40.0 3.44e-01 71.9% 75.2%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 3.56e-01 75.0% 100.0%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 49.0 3.29e-01 96.9% 45.5%
2jzkA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.57 45.0 3.88e-01 87.5% 77.7%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 47.0 3.14e-01 95.3% 37.0%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 38.0 3.98e-01 100.0% 78.0%
3c6fA01 3.30.240.20 Alpha Beta › 2-Layer Sandwich › CRO Repressor › bsu07140 like domains 0.56 43.0 4.38e-01 85.9% 93.5%
4z3xA03 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.55 41.0 3.12e-01 85.9% 88.7%
3dxpA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 37.0 3.35e-01 71.9% 93.5%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 48.0 4.05e-01 100.0% 78.7%
8c0zE01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 3.41e-01 87.5% 94.7%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 41.0 3.38e-01 84.4% 95.9%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 45.0 3.01e-01 100.0% 39.0%
1e1hA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.53 40.0 2.82e-01 82.8% 80.4%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.48e-01 96.9% 50.0%
1ju2A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 2.91e-01 98.4% 52.7%
4z24A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 2.80e-01 95.3% 57.8%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.53 46.0 4.06e-01 100.0% 84.5%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 39.0 2.95e-01 82.8% 98.9%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.52e-01 96.9% 69.3%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 43.0 3.66e-01 92.2% 78.7%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 39.0 3.43e-01 84.4% 82.1%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.52 34.0 3.41e-01 100.0% 65.2%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.47e-01 96.9% 71.6%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 2.70e-01 96.9% 36.8%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.52 42.0 3.20e-01 95.3% 78.2%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.60e-01 90.6% 77.5%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.51 44.0 3.30e-01 95.3% 83.9%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.84e-01 84.4% 89.6%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.20e-01 96.9% 41.7%
5gvyA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.50 42.0 3.32e-01 96.9% 90.3%
4fk1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 3.48e-01 92.2% 97.3%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1176176 818.1.1.2 ↗ a+b two layers › DNA topoisomerase I domain › DNA topoisomerase I domain › DNA topoisomerase I domain › Top1B_N_bact 0.74 57.0 5.73e-01 100.0% 81.8%
3973165 818.1.1.0 ↗ a+b two layers › DNA topoisomerase I domain › DNA topoisomerase I domain › DNA topoisomerase I domain 0.74 65.0 6.05e-01 100.0% 87.5%
3611360 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.67 46.0 3.26e-01 71.9% 24.1%
3559236 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.66 42.0 4.54e-01 71.9% 76.4%
None — 0.65 47.0 3.57e-01 76.6% 98.7%
138328 818.1.1.1 ↗ a+b two layers › DNA topoisomerase I domain › DNA topoisomerase I domain › DNA topoisomerase I domain › VirDNA-topo-I_N 0.65 54.0 5.18e-01 100.0% 92.3%
3254444 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.64 44.0 3.12e-01 71.9% 25.6%
4959003 2008.1.1.114 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.64 44.0 3.86e-01 71.9% 77.9%
4890683 102.1.3.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › PAP_assoc 0.63 43.0 3.19e-01 71.9% 27.7%
3707477 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 50.0 3.07e-01 87.5% 50.2%
3206852 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.63 43.0 2.87e-01 71.9% 23.9%
4144845 220.1.1.289 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › HdcB 0.61 49.0 4.14e-01 98.4% 52.7%
3396910 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 46.0 3.40e-01 84.4% 96.7%
3962048 227.1.1.15 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PF26035 0.60 41.0 3.55e-01 70.3% 55.0%
4991900 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.60 47.0 2.92e-01 87.5% 28.6%
3754695 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 41.0 3.35e-01 73.4% 65.6%
3592578 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 46.0 2.90e-01 87.5% 38.2%
4024411 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 35.0 3.79e-01 100.0% 69.1%
5032556 2008.1.1.5 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.59 41.0 3.92e-01 73.4% 76.0%
3507420 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 46.0 4.15e-01 90.6% 89.5%
5065184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 39.0 4.53e-01 95.3% 100.0%
4330184 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 46.0 3.72e-01 87.5% 95.2%
3764706 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 40.0 2.70e-01 73.4% 18.4%
4052768 3675.1.1.0 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.57 41.0 3.13e-01 75.0% 38.7%
3993275 109.2.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.56 35.0 2.21e-01 95.3% 11.6%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 3.99e-01 95.3% 73.8%
4073602 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 39.0 3.29e-01 75.0% 94.5%
3618206 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.55 45.0 3.24e-01 92.2% 65.6%
3931356 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.54 45.0 3.30e-01 92.2% 74.9%
3408623 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.54 46.0 3.28e-01 93.8% 46.8%
3280521 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 45.0 3.06e-01 93.8% 53.2%
598 4.1.1.68 ↗ beta barrels › SH3 › SH3 › SH3 › YorP 0.53 37.0 3.62e-01 73.4% 81.7%
5009633 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.80e-01 87.5% 80.0%
4461475 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 36.0 3.56e-01 71.9% 71.4%
3595512 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 43.0 3.18e-01 93.8% 67.2%
4307735 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 44.0 2.73e-01 95.3% 66.5%
4443919 2003.1.10.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.52 41.0 3.31e-01 89.1% 66.9%
3733286 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.51 43.0 2.83e-01 95.3% 44.4%
4928706 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.51 37.0 3.64e-01 90.6% 71.4%
3275832 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.51 35.0 3.81e-01 95.3% 85.5%
3586827 274.1.1.25 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.51 43.0 3.59e-01 96.9% 58.3%
4945674 2.1.1.252 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2_C 0.50 34.0 3.39e-01 71.9% 67.1%
None — 0.50 42.0 2.67e-01 95.3% 38.9%
D2 medium residues 66-123_182-248
PDB
Domain cluster: rep: hypothetical_protein_APZ24_gp269__YP_009172670__Ostreococcus_lucimarinus_virus_2__1663208__D68-112_202-248
D3 medium residues 124-181
PDB
Domain cluster: rep: putative_topoisomerase_type_I__YP_001648275__Ostreococcus_tauri_virus_OtV5__1785753__D135-191