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hypothetical_protein_ORF3

Euk-Vir

BtNv-AlphaCoV_SC2013

hypothetical_protein_ORF3__YP_009201731__BtNv-AlphaCoV_SC2013__1503291

Identity

Accession:: YP_009201731 ↗
Protein ID:: hypothetical_protein_ORF3
Kingdom:: euk

Quality

78.2 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Alphacoronavirus› BtNv-AlphaCoV/SC2013

TaxID: 1503291

Cluster

View cluster (89 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-118

PDB

Domain cluster: rep: hypothetical_protein_BCHV2_gp4__YP_001552237__Rhinolophus_bat_coronavirus_HKU2__693998__D62-124

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03053.20 best	Corona_NS3b	80.1	3.10e-22	100.0%	34.5%

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dd5A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.67	54.0	4.91e-01	85.5%	94.5%
1lf6A02	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.66	56.0	3.66e-01	95.2%	23.5%
2pjqA02	1.20.58.1910	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.66	54.0	4.85e-01	89.2%	85.2%
3eslA01	1.20.58.2070	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.66	51.0	5.34e-01	95.2%	94.7%
3kflA03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.66	53.0	4.20e-01	88.0%	49.7%
1wkbA03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.65	51.0	4.59e-01	88.0%	66.9%
2chpA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.64	50.0	4.20e-01	86.7%	96.6%
2i0mA02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.63	53.0	4.97e-01	92.8%	95.0%
1ydxA02	1.10.287.1120	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein	0.62	43.0	4.20e-01	71.1%	88.9%
2qr4A01	1.20.140.70	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain	0.62	53.0	4.37e-01	96.4%	72.4%
4dmvA01	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.62	48.0	4.84e-01	98.8%	85.9%
6tkyA03	1.20.58.740	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C	0.61	51.0	4.51e-01	92.8%	88.5%
2kmfA01	1.20.58.810	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27	0.61	50.0	4.71e-01	92.8%	76.5%
1chuA03	1.20.58.100	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain	0.60	52.0	5.14e-01	100.0%	97.7%
7vwtA01	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.58	49.0	3.35e-01	96.4%	60.6%
3unoE00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.57	48.0	3.90e-01	96.4%	81.4%
7k18A01	1.20.120.350	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C	0.56	48.0	4.12e-01	96.4%	77.6%
2ebzA02	1.10.167.10	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2	0.56	40.0	4.10e-01	98.8%	79.0%
1dgnA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.52	32.0	3.14e-01	77.1%	56.2%
3lkdB01	1.20.1260.30	Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain	0.52	42.0	3.27e-01	89.2%	97.3%

ECOD (25)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3943720	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.74	60.0	5.06e-01	89.2%	77.1%
4257759	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.70	49.0	4.79e-01	72.3%	84.4%
5040245	140.1.1.9 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_3	0.69	53.0	3.92e-01	83.1%	40.0%
3708344	604.1.1.160 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DYH2-5-8_CC	0.68	61.0	5.24e-01	98.8%	81.5%
3713791	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.65	57.0	5.20e-01	97.6%	86.4%
3925829	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.64	55.0	5.03e-01	96.4%	87.3%
4928813	3843.1.1.0 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K	0.64	40.0	4.17e-01	74.7%	69.3%
3934926	604.3.1.0 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain	0.63	53.0	5.07e-01	95.2%	93.0%
3193532	622.4.1.35 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › PF26729	0.63	47.0	4.58e-01	78.3%	78.9%
3581262	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.62	53.0	5.17e-01	94.0%	100.0%
3929109	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.62	52.0	4.77e-01	92.8%	87.3%
3996047	6155.1.1.2 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop	0.62	46.0	4.81e-01	78.3%	100.0%
3581026	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.62	52.0	4.49e-01	95.2%	80.0%
3284776	5010.1.1.0 ↗	extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV	0.62	39.0	4.58e-01	73.5%	96.4%
5044025	632.1.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain	0.61	43.0	4.31e-01	74.7%	78.8%
4239786	109.4.1.291 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF_NOP9	0.60	49.0	2.91e-01	90.4%	14.6%
3699244	601.24.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FRB_dom	0.60	47.0	4.74e-01	95.2%	84.7%
4991159	604.5.1.2 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU	0.58	49.0	4.06e-01	96.4%	86.9%
3484071	604.13.1.0 ↗	alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like	0.58	47.0	4.11e-01	90.4%	60.8%
4968405	375.1.1.26 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2	0.58	45.0	4.12e-01	85.5%	64.5%
3689709	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.55	37.0	3.31e-01	74.7%	47.5%
3274161	4163.1.1.1 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5	0.54	49.0	4.14e-01	100.0%	96.3%
2890670	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.53	42.0	3.61e-01	88.0%	85.6%
4322883	601.13.1.11 ↗	alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › FlaF	0.52	42.0	4.07e-01	95.2%	81.0%
3229344	601.1.2.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608)	0.50	43.0	3.40e-01	100.0%	65.8%

D2 high residues 122-193

PDB

Domain cluster: rep: putative_membrane_protein__YP_009408173__Morelia_viridis_nidovirus__2016400__D128-203

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03053.20 best	Corona_NS3b	80.6	2.00e-22	100.0%	33.2%