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hypothetical_protein_OlV1_004c
Euk-VirOstreococcus_lucimarinus_virus_1
hypothetical_protein_OlV1_004c__YP_004061637__Ostreococcus_lucimarinus_virus_1__880162
Identity
- Accession:
- YP_004061637 ↗
- Protein ID:
- hypothetical_protein_OlV1_004c
- Kingdom:
- euk
Quality
70.4
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prasinovirus›
Ostreococcus_lucimarinus_virus_1
TaxID: 880162
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-174
Domain cluster:
rep: leucine_rich_repeat_gene_family__YP_008004359__Choristoneura_biennis_entomopoxvirus__10288__D305-426
Pfam (10)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23598.2 best | LRR_14 | 55.0 | 8.30e-15 | 52.9% | 20.7% |
| PF13855.13 | LRR_8 | 45.9 | 5.40e-12 | 38.1% | 95.1% |
| PF13855.13 | LRR_8 | 38.9 | 8.00e-10 | 38.1% | 96.7% |
| PF13855.13 | LRR_8 | 28.4 | 1.60e-06 | 34.2% | 78.7% |
| PF12799.14 | LRR_4 | 28.4 | 2.00e-06 | 29.0% | 90.9% |
| PF12799.14 | LRR_4 | 34.5 | 2.50e-08 | 26.5% | 84.1% |
| PF00560.40 | LRR_1 | 16.2 | 1.20e-02 | 14.2% | 100.0% |
| PF00560.40 | LRR_1 | 17.3 | 4.80e-03 | 14.2% | 100.0% |
| PF00560.40 | LRR_1 | 14.0 | 6.20e-02 | 14.2% | 91.3% |
| PF00560.40 | LRR_1 | 16.5 | 8.90e-03 | 14.2% | 100.0% |
D2
high
residues 257-350
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7qpgW01 | 1.10.357.150 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.75 | 67.0 | 5.35e-01 | 100.0% | 91.6% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.74 | 50.0 | 5.21e-01 | 70.2% | 81.6% |
| 4ap2B01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.70 | 61.0 | 5.46e-01 | 96.8% | 93.3% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.70 | 60.0 | 5.76e-01 | 95.7% | 99.1% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.65 | 48.0 | 4.21e-01 | 76.6% | 86.2% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.65 | 45.0 | 4.54e-01 | 72.3% | 78.4% |
| 5mdtA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 56.0 | 4.81e-01 | 97.9% | 76.3% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 45.0 | 4.39e-01 | 71.3% | 82.2% |
| 6tkyA03 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.64 | 49.0 | 4.53e-01 | 83.0% | 90.2% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.64 | 33.0 | 3.99e-01 | 86.2% | 78.0% |
| 3d7iB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.63 | 41.0 | 4.09e-01 | 84.0% | 63.3% |
| 1wfdA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 40.0 | 4.07e-01 | 75.5% | 64.5% |
| 3caxA01 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.63 | 45.0 | 3.44e-01 | 74.5% | 37.8% |
| 1konA01 | 1.10.10.200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain | 0.62 | 41.0 | 4.60e-01 | 77.7% | 91.2% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.62 | 42.0 | 4.17e-01 | 71.3% | 74.5% |
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.62 | 53.0 | 5.06e-01 | 100.0% | 87.9% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.60 | 30.0 | 3.82e-01 | 86.2% | 84.3% |
| 2vx2G02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.60 | 34.0 | 4.20e-01 | 83.0% | 94.5% |
| 2lfrA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.60 | 38.0 | 3.58e-01 | 70.2% | 53.2% |
| 6t0bc02 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.60 | 43.0 | 3.48e-01 | 76.6% | 42.9% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.59 | 46.0 | 3.54e-01 | 84.0% | 81.3% |
| 3agtA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.59 | 41.0 | 3.73e-01 | 74.5% | 51.9% |
| 2pz9A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 46.0 | 3.75e-01 | 85.1% | 47.5% |
| 1y6xA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.58 | 33.0 | 3.49e-01 | 70.2% | 60.9% |
| 4akrA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.58 | 52.0 | 5.00e-01 | 100.0% | 98.1% |
| 4flbA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 48.0 | 4.37e-01 | 100.0% | 100.0% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.55 | 40.0 | 3.74e-01 | 76.6% | 67.2% |
| 1hr7C02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 43.0 | 3.33e-01 | 86.2% | 83.1% |
| 8alzB08 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.55 | 43.0 | 3.91e-01 | 86.2% | 72.5% |
| 4cs9B02 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.54 | 39.0 | 3.75e-01 | 89.4% | 66.4% |
| 6f0cA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 45.0 | 3.04e-01 | 93.6% | 86.2% |
| 7dvqK01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.53 | 45.0 | 3.73e-01 | 95.7% | 54.3% |
| 8sbeA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.53 | 38.0 | 3.16e-01 | 78.7% | 62.0% |
| 3nyjA00 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.51 | 44.0 | 3.63e-01 | 98.9% | 96.1% |
| 1upkA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.51 | 43.0 | 3.08e-01 | 96.8% | 33.2% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.51 | 42.0 | 3.52e-01 | 91.5% | 72.6% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 42.0 | 4.01e-01 | 94.7% | 92.9% |
| 4f91B04 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.50 | 38.0 | 3.42e-01 | 84.0% | 66.2% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3269613 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.71 | 63.0 | 4.05e-01 | 100.0% | 26.5% |
| 3252760 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.69 | 47.0 | 4.41e-01 | 70.2% | 71.1% |
| 4995391 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.67 | 45.0 | 4.58e-01 | 71.3% | 71.1% |
| 3586131 | 109.4.1.1333 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35, PF27614 | 0.67 | 57.0 | 3.39e-01 | 98.9% | 32.6% |
| 3814731 | 109.4.1.575 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF577 | 0.66 | 56.0 | 3.87e-01 | 92.6% | 35.5% |
| 3898161 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.65 | 51.0 | 3.74e-01 | 86.2% | 46.4% |
| 3783862 | 603.1.1.17 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE | 0.65 | 52.0 | 3.85e-01 | 88.3% | 89.2% |
| 4501359 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.65 | 51.0 | 4.70e-01 | 86.2% | 75.2% |
| 3492369 | 622.4.1.21 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › Frag1 | 0.65 | 46.0 | 4.25e-01 | 73.4% | 90.0% |
| 3497911 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.64 | 45.0 | 4.04e-01 | 73.4% | 61.5% |
| 3566007 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.64 | 45.0 | 4.24e-01 | 72.3% | 73.0% |
| 5055943 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.64 | 44.0 | 4.38e-01 | 71.3% | 73.0% |
| 3598261 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.64 | 44.0 | 3.76e-01 | 71.3% | 78.1% |
| 3700672 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.64 | 44.0 | 4.14e-01 | 71.3% | 79.1% |
| None | — | 0.63 | 43.0 | 3.42e-01 | 71.3% | 36.0% | |
| 3317291 | 601.1.1.63 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Glyco_hydro81C | 0.63 | 54.0 | 4.68e-01 | 95.7% | 92.0% |
| 3438984 | 192.15.1.176 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Cornichon | 0.63 | 45.0 | 4.74e-01 | 74.5% | 84.3% |
| 3461418 | 109.4.1.509 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT | 0.63 | 55.0 | 4.21e-01 | 96.8% | 49.3% |
| 3939163 | 109.6.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N | 0.63 | 55.0 | 3.58e-01 | 100.0% | 61.4% |
| 3892460 | 548.1.1.1 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP | 0.62 | 34.0 | 4.09e-01 | 94.7% | 83.3% |
| 4414166 | 109.4.1.1253 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Atp25_C | 0.62 | 54.0 | 3.82e-01 | 98.9% | 76.1% |
| 3254719 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.60 | 42.0 | 4.23e-01 | 73.4% | 78.9% |
| 3614501 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 51.0 | 3.66e-01 | 100.0% | 73.8% |
| 3280086 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.59 | 44.0 | 3.66e-01 | 86.2% | 42.8% |
| 3227959 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.58 | 46.0 | 4.03e-01 | 85.1% | 78.6% |
| 3766955 | 192.7.1.17 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FAM186A-B_C | 0.58 | 41.0 | 3.58e-01 | 74.5% | 77.9% |
| 3931268 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 47.0 | 3.65e-01 | 91.5% | 48.9% |
| 3386456 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.57 | 39.0 | 4.14e-01 | 75.5% | 82.5% |
| 3619724 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.57 | 40.0 | 3.99e-01 | 73.4% | 73.0% |
| 3257010 | 109.6.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N | 0.57 | 47.0 | 3.08e-01 | 92.6% | 26.3% |
| 3506953 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 48.0 | 3.84e-01 | 95.7% | 68.7% |
| 4193088 | 109.4.1.170 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N | 0.56 | 49.0 | 2.99e-01 | 96.8% | 21.7% |
| 3212615 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.56 | 41.0 | 3.01e-01 | 77.7% | 46.3% |
| 3995447 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 44.0 | 3.54e-01 | 89.4% | 45.5% |
| None | — | 0.55 | 48.0 | 3.62e-01 | 100.0% | 38.4% | |
| 3200543 | 109.4.1.368 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SHNi-TPR | 0.55 | 45.0 | 3.05e-01 | 93.6% | 74.2% |
| 5049166 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 47.0 | 3.72e-01 | 100.0% | 87.1% |
| 3258505 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.53 | 45.0 | 3.84e-01 | 94.7% | 68.4% |
| 3665523 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 3.44e-01 | 91.5% | 54.5% |
| 4021129 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.52 | 45.0 | 4.07e-01 | 96.8% | 70.8% |
| 5012794 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.52 | 37.0 | 2.56e-01 | 75.5% | 23.4% |
D3
medium
residues 175-255