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hypothetical_protein_OlV1_222c

Euk-Vir

Ostreococcus_lucimarinus_virus_1

hypothetical_protein_OlV1_222c__YP_004061854__Ostreococcus_lucimarinus_virus_1__880162

Identity

Accession:
YP_004061854 ↗
Protein ID:
hypothetical_protein_OlV1_222c
Kingdom:
euk

Quality

78.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_lucimarinus_virus_1

TaxID: 880162

Cluster

View cluster (126 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 262-439
PDB
Domain cluster: rep: putative_capsid_protein_4__YP_003969808__Cafeteria_roenbergensis_virus_BV-PW1__693272__D326-494
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04451.18 best Capsid_NCLDV 54.7 1.60e-14 96.6% 62.2%
D2 medium residues 57-120_200-233
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16903.13 best Capsid_N 26.6 5.90e-06 92.9% 33.3%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8cwoF01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.57 41.0 4.30e-01 95.9% 81.1%
1sc6A03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 35.0 3.80e-01 95.9% 73.2%
1mwqA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.57 41.0 4.11e-01 99.0% 74.0%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 4.43e-01 98.0% 93.6%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 4.49e-01 99.0% 80.9%
2iumA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.54 46.0 3.66e-01 95.9% 98.1%
2mizA00 2.60.40.2900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 4.05e-01 95.9% 91.7%
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.98e-01 94.9% 77.7%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.53 41.0 4.13e-01 98.0% 79.6%
3pcoB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.53 38.0 3.91e-01 95.9% 77.7%
6qe7A01 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.51 42.0 3.75e-01 100.0% 63.2%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 33.0 3.31e-01 95.9% 64.3%
5oj2B06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.94e-01 78.6% 87.9%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 44.0 3.84e-01 95.9% 86.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4850052 10.2.1.54 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N 0.84 77.0 5.91e-01 98.0% 77.8%
3196701 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.62 35.0 3.55e-01 77.6% 55.0%
5081528 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 44.0 4.56e-01 98.0% 82.2%
4967966 11.1.1.246 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.59 35.0 3.67e-01 98.0% 64.4%
3435055 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.58 52.0 4.72e-01 98.0% 80.8%
3988912 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.58 40.0 4.59e-01 82.7% 100.0%
3176550 304.9.1.74 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Nab6_mRNP_bdg 0.54 38.0 3.07e-01 100.0% 39.4%
1314824 304.28.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.53 39.0 3.77e-01 96.9% 66.7%
3600590 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 37.0 3.68e-01 100.0% 67.6%
4046402 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.53 39.0 3.90e-01 95.9% 77.0%
4382093 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.53 37.0 3.81e-01 95.9% 76.8%
3555669 304.126.1.1 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.51 35.0 3.34e-01 95.9% 57.5%
3786296 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 35.0 3.35e-01 95.9% 59.2%
3470213 11.1.1.223 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ceramidse_alk_C 0.50 45.0 4.02e-01 100.0% 80.7%
D3 medium residues 121-199
PDB
Domain cluster: representative