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hypothetical_protein_OtV2_113
Euk-VirOstreococcus_tauri_virus_2
hypothetical_protein_OtV2_113__YP_004063546__Ostreococcus_tauri_virus_2__696472
Identity
- Accession:
- YP_004063546 ↗
- Protein ID:
- hypothetical_protein_OtV2_113
- Kingdom:
- euk
Quality
82.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prasinovirus›
Ostreococcus_tauri_virus_2
TaxID: 696472
Cluster
View cluster (69 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-41_93-171
Domain cluster:
rep: hypothetical_protein_PBCV1_A412R__NP_048769__Paramecium_bursaria_Chlorella_virus_1__10506__D3-151
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19196.6 best | DUF5871 | 137.9 | 2.70e-40 | 78.3% | 56.9% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4glaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 48.0 | 5.46e-01 | 71.7% | 100.0% |
| 2j4xA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 39.0 | 4.90e-01 | 75.8% | 100.0% |
| 1u5kA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 41.0 | 4.94e-01 | 87.5% | 95.1% |
| 2f4iA02 | 2.40.50.420 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Envelope glycoprotein gp160, DUF2291, alpha/beta domain | 0.59 | 43.0 | 4.43e-01 | 85.0% | 80.0% |
| 3aqqA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 42.0 | 4.58e-01 | 82.5% | 92.9% |
| 1jb7B00 | 2.40.200.10 | Mainly Beta › Beta Barrel › Telomere-binding Protein Beta Subunit; Chain B › Telomere-binding Protein Beta Subunit; Chain | 0.56 | 46.0 | 3.75e-01 | 86.7% | 49.5% |
| 4gnxB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 43.0 | 4.33e-01 | 100.0% | 83.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4486408 | 2.1.1.326 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF5482 | 0.76 | 63.0 | 5.90e-01 | 87.5% | 91.7% |
| 3799466 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 43.0 | 5.03e-01 | 78.3% | 92.9% |
| 5059841 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 42.0 | 4.64e-01 | 72.5% | 81.0% |
| 5082519 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 51.0 | 4.20e-01 | 85.8% | 49.0% |
| 5004339 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 51.0 | 4.49e-01 | 85.8% | 65.5% |
| 3789879 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 42.0 | 4.47e-01 | 70.0% | 90.5% |
| 3172889 | 2.1.1.286 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29129 | 0.61 | 50.0 | 4.23e-01 | 88.3% | 86.7% |
D2
medium
residues 42-92
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19196.6 best | DUF5871 | 59.3 | 5.10e-16 | 100.0% | 35.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 54.0 | 4.40e-01 | 88.2% | 72.8% |
| 2ql2C00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.65 | 48.0 | 4.64e-01 | 78.4% | 69.0% |
| 4j31A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 50.0 | 3.03e-01 | 92.2% | 12.6% |
| 4nleA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.63 | 48.0 | 4.27e-01 | 92.2% | 56.6% |
| 2j91A03 | 6.10.250.1570 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 41.0 | 4.36e-01 | 80.4% | 100.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5049118 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 43.0 | 4.00e-01 | 74.5% | 60.0% |
| 4990074 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.57 | 40.0 | 3.87e-01 | 76.5% | 63.3% |
| 3203068 | 101.1.1.256 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Clr5 | 0.55 | 38.0 | 3.72e-01 | 72.5% | 69.1% |
| 3575777 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.54 | 37.0 | 3.76e-01 | 72.5% | 74.0% |
| 3191996 | 101.1.2.480 ↗ | alpha arrays › HTH › HTH › winged helix domain › Clr5 | 0.52 | 37.0 | 3.65e-01 | 98.0% | 74.5% |