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hypothetical_protein_OtV5_134

Euk-Vir

Ostreococcus_tauri_virus_OtV5

hypothetical_protein_OtV5_134__YP_001648227__Ostreococcus_tauri_virus_OtV5__1785753

Identity

Accession:
YP_001648227 ↗
Protein ID:
hypothetical_protein_OtV5_134
Kingdom:
euk

Quality

74.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_tauri_virus_OtV5

TaxID: 1785753

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-54
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19060.6 best DVNP 67.6 1.40e-18 100.0% 59.5%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 57.0 4.60e-01 89.8% 46.8%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.70 38.0 3.34e-01 100.0% 36.1%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 51.0 4.23e-01 85.7% 47.7%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 51.0 3.30e-01 91.8% 19.1%
2yzsA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.62 42.0 2.71e-01 75.5% 15.4%
2kkxA00 3.30.40.80 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Effector protein NleG 0.60 49.0 3.80e-01 87.8% 52.0%
3vkgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.60 43.0 2.97e-01 75.5% 38.1%
5veoA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.59 41.0 2.59e-01 95.9% 13.4%
2eqpA00 4.10.400.20 Few Secondary Structures › Irregular › Low-density Lipoprotein Receptor › 0.54 37.0 3.76e-01 87.8% 72.0%
2lxwA00 6.10.250.1730 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 34.0 3.34e-01 77.6% 56.4%
4f03A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 40.0 3.32e-01 89.8% 53.3%
2drpA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 31.0 3.77e-01 89.8% 100.0%
1yuiA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 36.0 3.60e-01 75.5% 68.5%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.53 36.0 3.13e-01 73.5% 63.4%
3al8B02 3.30.1680.10 Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2 0.52 34.0 3.80e-01 81.6% 100.0%
2rsiA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 30.0 3.52e-01 85.7% 100.0%
2xqnT01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.51 38.0 3.60e-01 85.7% 91.9%
1jmuB02 1.10.2040.10 Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 2 › Protein mu-1, chain B, domain 2 0.51 43.0 3.21e-01 95.9% 84.7%
1cjaA02 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.50 35.0 2.41e-01 73.5% 26.0%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3498231 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 57.0 4.76e-01 85.7% 51.8%
3924159 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 52.0 4.30e-01 77.6% 47.8%
3928741 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.72 56.0 4.62e-01 98.0% 48.2%
3259913 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 52.0 4.59e-01 79.6% 57.3%
3669337 376.1.2.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-RING_11 0.70 55.0 4.90e-01 85.7% 67.1%
3211179 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 54.0 4.47e-01 98.0% 48.2%
3993220 376.1.2.24 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › RH_dom 0.69 46.0 4.48e-01 93.9% 61.8%
5071927 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 56.0 5.36e-01 95.9% 80.0%
3273744 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.65 53.0 4.30e-01 95.9% 47.4%
3257115 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 49.0 4.93e-01 91.8% 81.6%
3357520 310.2.1.28 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Myb_DNA-bind_3 0.63 40.0 3.31e-01 98.0% 37.6%
3495811 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 36.0 4.28e-01 75.5% 86.7%
4503505 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.63 53.0 4.02e-01 95.9% 47.5%
4428918 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.61 42.0 3.88e-01 91.8% 53.8%
3260234 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.61 49.0 3.58e-01 95.9% 33.1%
3641227 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 36.0 3.17e-01 98.0% 40.0%
3591280 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 36.0 4.02e-01 79.6% 80.0%
3584956 386.1.1.12 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Sgf11 0.60 34.0 2.78e-01 89.8% 28.4%
3794329 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 41.0 3.66e-01 71.4% 55.7%
3736309 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.59 34.0 2.38e-01 95.9% 15.9%
3663614 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 44.0 4.63e-01 81.6% 88.9%
3517305 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.58 46.0 3.72e-01 95.9% 45.3%
3870529 386.1.1.51 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CEP104_ZnF 0.58 47.0 4.58e-01 93.9% 81.8%
3643916 375.1.1.235 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADD_ATRX 0.57 40.0 4.23e-01 77.6% 100.0%
3468455 376.1.3.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX 0.57 40.0 4.21e-01 75.5% 100.0%
5069117 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.57 41.0 2.71e-01 79.6% 86.0%
3671431 376.1.1.40 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.57 42.0 4.41e-01 100.0% 88.9%
3417508 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.57 41.0 4.07e-01 87.8% 74.0%
3738593 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.56 43.0 3.80e-01 95.9% 56.0%
3304269 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.56 41.0 4.37e-01 89.8% 97.5%
1125220 375.1.1.14 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p 0.55 37.0 3.37e-01 91.8% 50.0%
3333634 376.1.3.24 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › NSD_PHD 0.54 43.0 4.15e-01 98.0% 76.7%
3851875 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.53 44.0 4.44e-01 95.9% 100.0%
3790626 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 2.94e-01 98.0% 30.0%
3616025 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 2.93e-01 100.0% 29.1%
3392271 386.1.1.26 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 0.52 31.0 3.65e-01 91.8% 100.0%
3695190 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 39.0 3.48e-01 87.8% 81.3%
3370897 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 39.0 2.98e-01 93.9% 86.9%
3263296 7516.1.1.35 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch 0.51 38.0 2.29e-01 89.8% 10.8%