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hypothetical_protein_PGCG_00076

Euk-Vir

Phaeocystis_globosa_virus

hypothetical_protein_PGCG_00076__YP_008052395__Phaeocystis_globosa_virus__251749

Identity

Accession:
YP_008052395 ↗
Protein ID:
hypothetical_protein_PGCG_00076
Kingdom:
euk

Quality

74.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prymnesiovirus› Phaeocystis_globosa_virus

TaxID: 251749

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 72-160
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00177__D116-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19141.6 best DUF5824 27.7 3.70e-06 62.9% 40.2%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.80 40.0 5.62e-01 74.2% 100.0%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 49.0 4.53e-01 73.0% 76.8%
4ppuA00 1.10.590.10 Mainly Alpha › Orthogonal Bundle › Chorismate Mutase, subunit A › Chorismate mutase, AroQ class superfamily, eukaryotic 0.68 42.0 3.02e-01 79.8% 22.9%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.66 33.0 4.03e-01 74.2% 73.7%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 36.0 3.81e-01 71.9% 60.8%
1ig8A03 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.60 47.0 3.39e-01 85.4% 71.7%
3triA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.60 41.0 3.94e-01 89.9% 60.2%
7fciA01 1.20.1530.20 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › 0.58 47.0 3.38e-01 91.0% 83.4%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.58 36.0 4.02e-01 80.9% 82.1%
4udsA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 46.0 3.60e-01 92.1% 41.1%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 45.0 4.01e-01 91.0% 89.6%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 42.0 4.06e-01 88.8% 89.6%
3clmA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 42.0 2.79e-01 85.4% 41.8%
1yz6A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.52 35.0 3.56e-01 83.1% 71.3%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.52 36.0 3.81e-01 71.9% 98.7%
3h0gA05 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.51 40.0 3.41e-01 84.3% 63.7%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.51 40.0 4.01e-01 88.8% 100.0%
2r2iA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 32.0 3.25e-01 82.0% 64.4%
3i9v104 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.50 37.0 3.57e-01 93.3% 68.0%
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.50 40.0 3.46e-01 83.1% 57.7%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030272 148.1.3.374 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Yip1 0.70 49.0 4.28e-01 73.0% 93.3%
3503552 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.67 48.0 4.11e-01 74.2% 53.2%
3230930 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.67 45.0 4.65e-01 84.3% 72.9%
3649730 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.66 40.0 3.99e-01 80.9% 58.9%
5026768 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.65 39.0 3.63e-01 80.9% 46.4%
5027071 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.65 45.0 4.47e-01 71.9% 89.5%
3414776 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.63 44.0 3.80e-01 73.0% 57.2%
1113428 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.63 45.0 4.47e-01 74.2% 93.4%
4016803 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.63 45.0 4.49e-01 74.2% 96.7%
4975482 3290.1.1.0 ↗ alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B 0.62 44.0 4.32e-01 73.0% 78.9%
4969962 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.62 47.0 4.26e-01 80.9% 71.7%
4981631 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.61 46.0 4.19e-01 80.9% 70.8%
5015839 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.59 36.0 3.98e-01 79.8% 77.1%
1117796 102.1.3.7 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Nrap_D5 0.59 45.0 3.74e-01 82.0% 75.6%
3560313 109.4.1.141 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MRP-S27 0.58 44.0 2.98e-01 80.9% 55.1%
5001160 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 35.0 3.15e-01 79.8% 41.5%
3389357 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.56 43.0 3.68e-01 82.0% 55.2%
3551714 592.6.1.2 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › PF26582 0.56 41.0 3.98e-01 78.7% 88.6%
3989254 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.56 38.0 3.77e-01 85.4% 65.3%
3832324 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.55 38.0 3.25e-01 85.4% 44.1%
3862880 1016.1.1.0 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 0.55 29.0 3.05e-01 73.0% 52.9%
4935111 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.55 42.0 3.30e-01 86.5% 37.9%
3260056 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 33.0 3.23e-01 84.3% 53.0%
3874269 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.54 43.0 3.90e-01 100.0% 63.3%
3908024 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.54 35.0 3.57e-01 83.1% 67.1%
3779776 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.54 42.0 3.27e-01 86.5% 56.2%
3934189 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.54 45.0 3.48e-01 95.5% 76.3%
3910438 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.52 35.0 3.04e-01 74.2% 42.1%
3764093 6171.1.1.1 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD 0.52 39.0 3.88e-01 79.8% 98.9%
None — 0.52 44.0 2.65e-01 92.1% 67.7%
3557006 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.52 44.0 4.34e-01 98.9% 86.3%
3637603 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.51 41.0 3.14e-01 100.0% 37.6%
3620604 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.51 41.0 4.21e-01 88.8% 90.6%
4888971 102.1.3.21 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Nrap_D5, Nrap_D6 0.51 37.0 3.12e-01 88.8% 44.7%
3275451 633.12.1.0 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.51 40.0 3.80e-01 85.4% 100.0%
3534586 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.51 40.0 3.21e-01 100.0% 41.6%
4999997 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.51 37.0 3.70e-01 93.3% 72.6%
3866897 148.1.1.12 ↗ alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.51 42.0 4.16e-01 92.1% 85.3%
3344260 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.50 42.0 3.15e-01 93.3% 95.7%