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hypothetical_protein_PGCG_00077

Euk-Vir

Phaeocystis_globosa_virus

hypothetical_protein_PGCG_00077__YP_008052396__Phaeocystis_globosa_virus__251749

Identity

Accession:
YP_008052396 ↗
Protein ID:
hypothetical_protein_PGCG_00077
Kingdom:
euk

Quality

76.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prymnesiovirus› Phaeocystis_globosa_virus

TaxID: 251749

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-36_55-100
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 37.0 3.52e-01 98.8% 38.7%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 35.0 3.93e-01 93.8% 60.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 39.0 4.01e-01 98.8% 61.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 39.0 4.01e-01 97.5% 64.0%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.64 33.0 3.90e-01 100.0% 71.4%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 32.0 3.23e-01 100.0% 49.4%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 34.0 2.99e-01 86.3% 39.3%
2fkcA01 3.40.1350.40 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 39.0 3.52e-01 91.3% 57.3%
4qiwB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.52 43.0 3.59e-01 97.5% 91.4%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 42.0 3.92e-01 91.3% 98.1%
4fr4D01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 40.0 3.47e-01 85.0% 87.6%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.52 38.0 2.63e-01 80.0% 79.6%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 28.0 3.12e-01 86.3% 70.2%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.50 29.0 2.83e-01 86.3% 50.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079381 2003.1.3.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 0.81 38.0 2.56e-01 98.8% 13.7%
3987601 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 36.0 4.55e-01 93.8% 74.0%
4999054 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.75 36.0 2.82e-01 98.8% 22.4%
1140900 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.73 34.0 4.00e-01 96.2% 62.7%
4862766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 37.0 3.82e-01 93.8% 62.3%
3287903 802.1.1.1 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.62 33.0 4.02e-01 100.0% 82.0%
4029229 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.62 33.0 4.06e-01 96.2% 84.0%
3991315 2004.1.1.534 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF30386 0.58 45.0 3.46e-01 86.3% 73.5%
4126006 325.1.7.14 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid 0.57 36.0 3.97e-01 96.2% 78.5%
3650304 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.57 31.0 3.43e-01 98.8% 65.0%
3277907 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 46.0 3.43e-01 88.7% 66.2%
3620947 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 34.0 4.05e-01 98.8% 89.1%
5041307 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 40.0 2.72e-01 93.8% 22.7%
4009761 3454.1.1.2 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC 0.56 36.0 3.92e-01 98.8% 80.0%
3323488 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 40.0 2.72e-01 76.2% 38.7%
3821886 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 34.0 3.54e-01 86.3% 66.7%
5051933 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 39.0 3.06e-01 97.5% 35.9%
5009170 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 4.16e-01 97.5% 84.0%
3660808 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 47.0 3.38e-01 97.5% 56.6%
4566577 330.16.1.3 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › CEP19 0.53 42.0 4.03e-01 100.0% 72.6%
3930365 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.53 40.0 3.75e-01 93.8% 63.8%
4223616 2011.2.1.3 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.53 41.0 3.18e-01 86.3% 74.2%
3177133 193.1.1.1 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH 0.52 43.0 3.47e-01 90.0% 89.0%
4033266 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.52 40.0 2.83e-01 83.7% 78.1%
3463266 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.52 33.0 3.71e-01 86.3% 88.3%
3518991 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.51 42.0 4.38e-01 100.0% 94.7%
3911531 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.51 42.0 2.86e-01 98.8% 24.5%
4027686 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.51 29.0 3.38e-01 95.0% 81.8%