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hypothetical_protein_PGCG_00132

Euk-Vir

Phaeocystis_globosa_virus

hypothetical_protein_PGCG_00132__YP_008052451__Phaeocystis_globosa_virus__251749

Identity

Accession:
YP_008052451 ↗
Protein ID:
hypothetical_protein_PGCG_00132
Kingdom:
euk

Quality

72.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prymnesiovirus› Phaeocystis_globosa_virus

TaxID: 251749

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-110
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oezA02 1.10.3900.10 Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like 0.65 45.0 3.54e-01 71.6% 100.0%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 36.0 4.09e-01 79.0% 81.2%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.57 42.0 3.90e-01 100.0% 58.9%
6t4hA03 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.56 42.0 3.39e-01 82.7% 68.0%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 34.0 3.42e-01 90.1% 62.7%
2wssW01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.51 40.0 3.83e-01 85.2% 87.4%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.51 41.0 3.68e-01 86.4% 77.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3645891 5076.2.1.10 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 0.60 41.0 2.90e-01 70.4% 94.1%
4011261 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 43.0 2.82e-01 84.0% 36.6%
4012854 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 47.0 2.79e-01 97.5% 15.3%
3240456 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 35.0 3.52e-01 71.6% 72.9%
D2 medium residues 111-181
PDB
Domain cluster: rep: hypothetical_protein_OLNG_00151__YP_007674793__Ostreococcus_lucimarinus_virus_OlV5__754064__DFULL
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.74 68.0 5.31e-01 100.0% 54.9%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.73 56.0 5.34e-01 90.1% 69.9%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.70 38.0 4.30e-01 73.2% 69.1%
2jynA01 1.10.3560.10 Mainly Alpha › Orthogonal Bundle › yst0336 like fold › yst0336 like domain 0.65 45.0 3.58e-01 71.8% 44.9%
4fmrA02 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.65 38.0 3.53e-01 80.3% 45.5%
3h14A00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 42.0 2.71e-01 83.1% 97.6%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 36.0 3.13e-01 95.8% 45.3%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 43.0 4.12e-01 93.0% 95.3%
4n4nB00 3.90.640.100 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.51 30.0 3.31e-01 100.0% 75.0%
3gg7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.50 44.0 3.03e-01 98.6% 100.0%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 34.0 3.09e-01 76.1% 51.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3249964 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.79 60.0 5.79e-01 80.3% 81.2%
3561303 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 54.0 4.07e-01 85.9% 32.1%
3879791 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 54.0 3.74e-01 85.9% 23.6%
3397473 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 54.0 4.50e-01 85.9% 44.2%
3489023 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.73 54.0 4.48e-01 85.9% 45.8%
119462 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.73 67.0 5.27e-01 100.0% 54.9%
4979945 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.72 65.0 5.32e-01 98.6% 60.0%
3244537 6060.1.1.1 ↗ alpha arrays › Yst0336-like › Yst0336-like › Yst0336-like › PBDC1 0.67 47.0 3.62e-01 71.8% 42.1%
3706633 148.1.3.174 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RHSP 0.60 43.0 3.30e-01 76.1% 38.8%
5061619 1075.1.1.3 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.56 45.0 3.04e-01 88.7% 90.4%
4026963 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.55 38.0 3.00e-01 70.4% 99.3%
5083165 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 2.95e-01 97.2% 95.4%
3394225 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 34.0 2.95e-01 97.2% 42.6%
3671194 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 38.0 3.35e-01 95.8% 54.3%