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hypothetical_protein_PGCG_00176

Euk-Vir

Phaeocystis_globosa_virus

hypothetical_protein_PGCG_00176__YP_008052494__Phaeocystis_globosa_virus__251749

Identity

Accession:
YP_008052494 ↗
Protein ID:
hypothetical_protein_PGCG_00176
Kingdom:
euk

Quality

70.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-79
PDB
D2 high residues 101-253
PDB
D3 high residues 301-414
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c5uA02 1.10.3550.20 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › 0.68 61.0 5.81e-01 98.2% 89.3%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.66 39.0 4.23e-01 81.6% 69.8%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 37.0 3.79e-01 95.6% 59.3%
7dswA01 1.20.1530.20 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › 0.60 39.0 2.67e-01 78.1% 18.8%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.59 37.0 3.74e-01 79.8% 60.7%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.59 34.0 3.58e-01 93.9% 61.0%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 32.0 3.46e-01 74.6% 64.3%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 36.0 4.05e-01 100.0% 83.9%
4dvyP01 1.10.357.130 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.55 43.0 3.60e-01 82.5% 97.0%
6c62A00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.54 44.0 3.01e-01 92.1% 100.0%
3lbxB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 33.0 3.39e-01 77.2% 65.4%
4akgA02 1.20.140.100 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain 0.52 43.0 3.84e-01 91.2% 83.9%
1hciA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 35.0 3.47e-01 79.8% 64.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3319968 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 29.0 3.62e-01 77.2% 68.6%
4094218 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.62 41.0 4.16e-01 87.7% 68.2%
4657341 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.61 40.0 4.00e-01 87.7% 63.3%
3270478 6155.1.1.4 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.60 33.0 3.41e-01 83.3% 56.2%
4240705 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.58 36.0 4.15e-01 79.8% 84.7%
4507521 304.107.1.3 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › TrmE_N 0.58 43.0 3.27e-01 78.1% 50.5%
3601574 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.58 38.0 3.70e-01 93.0% 58.5%
4220767 601.25.1.1 alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.56 41.0 3.67e-01 76.3% 85.5%
3595205 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.54 38.0 3.04e-01 85.1% 36.8%
5056931 1075.5.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.54 42.0 3.37e-01 83.3% 77.9%
3844817 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.54 34.0 3.24e-01 77.2% 52.1%
3304227 5054.1.1.6 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.52 36.0 4.20e-01 71.9% 100.0%
4652128 1075.5.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.52 42.0 3.49e-01 88.6% 81.4%
3541653 3464.1.1.20 extended segments › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › FAM210A-B_dom 0.52 40.0 4.27e-01 93.9% 97.9%
4161014 5050.1.1.25 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › TLC 0.52 39.0 2.99e-01 77.2% 92.0%
4064871 1079.1.1.8 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE 0.50 42.0 3.49e-01 91.2% 80.5%
4015804 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.50 37.0 3.42e-01 87.7% 60.0%
D4 medium residues 80-100_254-297
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.63 41.0 4.23e-01 83.1% 69.8%
4m8aA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 40.0 4.02e-01 83.1% 68.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 33.0 3.33e-01 78.5% 53.0%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 33.0 3.43e-01 75.4% 60.0%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 37.0 3.69e-01 81.5% 63.6%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.56 37.0 2.56e-01 80.0% 19.1%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.54 35.0 3.44e-01 83.1% 60.9%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.38e-01 84.6% 75.8%
1kllA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 42.0 3.43e-01 95.4% 44.5%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 35.0 3.49e-01 83.1% 65.7%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.43e-01 84.6% 74.1%
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.40e-01 80.0% 54.2%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 35.0 2.68e-01 70.8% 45.8%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.51 31.0 3.25e-01 81.5% 65.5%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.20e-01 87.7% 48.6%
4gqaB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 42.0 2.90e-01 93.8% 42.3%
2wanA01 2.60.40.1130 Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain 0.51 39.0 3.49e-01 84.6% 93.7%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.31e-01 84.6% 64.6%
1zh8A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 42.0 3.13e-01 95.4% 51.1%
2kjzA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 37.0 4.01e-01 86.2% 94.4%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.31e-01 84.6% 79.5%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.25e-01 84.6% 81.2%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 33.0 3.28e-01 75.4% 62.9%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.28e-01 83.1% 58.3%
3rheA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 44.0 3.71e-01 100.0% 85.1%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 33.0 3.34e-01 78.5% 66.7%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4881570 206.1.3.24 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_lig_T4_1 0.79 69.0 4.52e-01 95.4% 70.4%
4962282 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.68 58.0 4.13e-01 96.9% 96.4%
4208229 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.65 37.0 4.14e-01 76.9% 74.0%
5012339 244.2.1.11 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 0.63 43.0 4.42e-01 95.4% 76.7%
4266955 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.61 39.0 3.97e-01 84.6% 66.2%
4668736 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.60 45.0 3.44e-01 81.5% 89.4%
4443386 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.60 39.0 4.02e-01 83.1% 71.7%
4172704 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 36.0 3.88e-01 78.5% 70.9%
3967396 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.59 39.0 3.92e-01 84.6% 67.7%
4492912 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.59 38.0 3.78e-01 83.1% 61.4%
5075316 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.59 38.0 3.71e-01 84.6% 60.0%
3931369 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 33.0 3.72e-01 80.0% 72.0%
4592530 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.59 38.0 3.82e-01 83.1% 66.2%
3493556 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 40.0 3.32e-01 80.0% 41.8%
3500438 5.1.4.277 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.58 36.0 2.47e-01 83.1% 17.1%
3990001 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.58 35.0 3.80e-01 78.5% 73.6%
5002760 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.57 35.0 3.43e-01 80.0% 55.7%
3513810 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 39.0 3.08e-01 81.5% 34.1%
4533523 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.57 37.0 3.77e-01 84.6% 67.7%
3283881 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.56 45.0 3.52e-01 95.4% 42.2%
3998421 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 38.0 3.83e-01 78.5% 70.8%
3176453 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 38.0 2.95e-01 87.7% 33.6%
3967106 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 48.0 3.28e-01 100.0% 87.7%
3278705 211.1.1.7 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.54 48.0 3.66e-01 100.0% 44.7%
3707971 2007.2.3.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.53 44.0 2.86e-01 98.5% 74.1%
3269367 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.50e-01 80.0% 61.1%
3422338 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 38.0 3.38e-01 76.9% 56.8%
4947543 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.53 35.0 3.39e-01 95.4% 59.5%
3810543 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.52 41.0 3.49e-01 86.2% 66.4%
3698917 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.52 41.0 3.34e-01 84.6% 71.7%
3503630 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.30e-01 81.5% 76.5%
3933119 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.29e-01 86.2% 63.8%
3715908 109.4.1.452 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLU 0.52 44.0 2.55e-01 100.0% 21.3%
3699577 220.1.1.236 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_27 0.52 41.0 3.43e-01 84.6% 64.5%
3630302 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.52 39.0 3.29e-01 81.5% 61.8%
3913573 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.52 42.0 3.44e-01 96.9% 48.3%
3280341 211.1.1.24 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N 0.51 36.0 4.10e-01 84.6% 96.0%
3417244 220.1.1.64 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.51 39.0 3.46e-01 81.5% 66.3%
3256547 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.32e-01 80.0% 62.0%
3939128 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.26e-01 81.5% 50.9%
3246081 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.51 33.0 3.70e-01 84.6% 86.0%
3742004 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.51 40.0 3.26e-01 86.2% 68.8%
3252283 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 40.0 3.20e-01 84.6% 62.4%
3407758 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.50 39.0 3.22e-01 83.1% 55.7%
5047735 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 38.0 2.93e-01 81.5% 48.3%
3257938 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.50 33.0 3.44e-01 95.4% 73.3%
3861538 220.1.1.118 beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH 0.50 39.0 3.20e-01 86.2% 60.8%
3524527 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.50 39.0 3.31e-01 84.6% 66.4%