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hypothetical_protein_PGCG_00183
Euk-VirPhaeocystis_globosa_virus
hypothetical_protein_PGCG_00183__YP_008052501__Phaeocystis_globosa_virus__251749
Identity
- Accession:
- YP_008052501 ↗
- Protein ID:
- hypothetical_protein_PGCG_00183
- Kingdom:
- euk
Quality
61.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prymnesiovirus›
Phaeocystis_globosa_virus
TaxID: 251749
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-109
Domain cluster:
rep: hypothetical_protein_crov194__YP_003969826__Cafeteria_roenbergensis_virus_BV-PW1__693272__D3-74
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19066.6 best | P9_TM | 86.5 | 1.10e-24 | 67.7% | 100.0% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.81 | 56.0 | 5.90e-01 | 70.6% | 90.1% |
| 5xtck00 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.76 | 53.0 | 5.41e-01 | 71.6% | 86.6% |
| 1bf3A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.71 | 52.0 | 3.89e-01 | 75.5% | 96.7% |
| 1fouA01 | 1.10.246.30 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.70 | 42.0 | 4.92e-01 | 75.5% | 83.8% |
| 5gl7A01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.66 | 46.0 | 3.85e-01 | 71.6% | 57.8% |
| 3eupB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 45.0 | 3.53e-01 | 70.6% | 59.5% |
| 6dcjA02 | 1.25.40.650 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 45.0 | 4.52e-01 | 73.5% | 77.9% |
| 3rlfF01 | 1.20.58.370 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like | 0.61 | 41.0 | 4.36e-01 | 70.6% | 80.2% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.60 | 46.0 | 3.91e-01 | 81.4% | 65.5% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.59 | 42.0 | 4.03e-01 | 72.5% | 96.6% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 41.0 | 3.70e-01 | 70.6% | 89.1% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 48.0 | 4.74e-01 | 86.3% | 98.1% |
| 3buxB01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.58 | 43.0 | 4.01e-01 | 78.4% | 96.1% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 39.0 | 4.47e-01 | 80.4% | 97.4% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 34.0 | 3.52e-01 | 85.3% | 62.0% |
| 2bjfA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.56 | 43.0 | 3.08e-01 | 82.4% | 58.8% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 41.0 | 3.56e-01 | 78.4% | 91.0% |
| 4al0A00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.53 | 40.0 | 3.63e-01 | 82.4% | 99.3% |
| 1cpyA02 | 1.10.287.410 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 33.0 | 3.72e-01 | 71.6% | 91.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5025118 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.76 | 54.0 | 5.44e-01 | 72.5% | 87.0% |
| 3600122 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.74 | 57.0 | 4.97e-01 | 80.4% | 81.3% |
| 4632722 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.72 | 50.0 | 3.71e-01 | 71.6% | 92.5% |
| 3787069 | 5069.1.3.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › CybS | 0.68 | 49.0 | 4.50e-01 | 73.5% | 73.6% |
| 5077194 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.61 | 45.0 | 4.27e-01 | 76.5% | 90.8% |
| 5007608 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.59 | 40.0 | 3.93e-01 | 70.6% | 73.0% |
| 3231234 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.59 | 45.0 | 4.17e-01 | 81.4% | 69.2% |
| 5024595 | 4333.1.1.2 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C | 0.58 | 45.0 | 3.19e-01 | 82.4% | 86.9% |
| 3720466 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.58 | 46.0 | 3.36e-01 | 84.3% | 84.7% |
| 5054165 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 50.0 | 3.93e-01 | 96.1% | 89.1% |
| 3595102 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.57 | 37.0 | 4.00e-01 | 71.6% | 80.0% |
| 3975382 | 601.13.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › FliS | 0.55 | 43.0 | 3.93e-01 | 83.3% | 85.2% |
| 3090881 | 4275.1.1.0 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like | 0.54 | 40.0 | 3.24e-01 | 78.4% | 66.7% |
| 3089539 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.52 | 41.0 | 2.97e-01 | 85.3% | 47.1% |
| 3795106 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.52 | 39.0 | 3.92e-01 | 81.4% | 88.6% |
| 4129138 | 10.12.1.53 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 | 0.50 | 36.0 | 2.82e-01 | 74.5% | 71.4% |
D2
medium
residues 110-190