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hypothetical_protein_PGCG_00352

Euk-Vir

Phaeocystis_globosa_virus

hypothetical_protein_PGCG_00352__YP_008052670__Phaeocystis_globosa_virus__251749

Identity

Accession:
YP_008052670 ↗
Protein ID:
hypothetical_protein_PGCG_00352
Kingdom:
euk

Quality

71.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prymnesiovirus› Phaeocystis_globosa_virus

TaxID: 251749

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-138
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 51.0 5.01e-01 74.0% 85.8%
3kbtA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 49.0 3.51e-01 75.0% 25.0%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 50.0 4.93e-01 74.0% 85.2%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.68 47.0 5.04e-01 72.0% 82.8%
4ie5A02 1.20.58.1470 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FTO C-terminal domain 0.66 58.0 5.30e-01 99.0% 91.8%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 52.0 5.41e-01 85.0% 91.5%
3cegA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.65 59.0 4.19e-01 100.0% 92.1%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.64 45.0 4.47e-01 85.0% 70.6%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.64 44.0 3.86e-01 71.0% 72.0%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 51.0 4.42e-01 90.0% 59.3%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.62 44.0 4.13e-01 74.0% 67.2%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.62 42.0 4.64e-01 74.0% 89.9%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 45.0 4.55e-01 77.0% 95.9%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 43.0 4.80e-01 75.0% 100.0%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.60 43.0 4.08e-01 74.0% 87.2%
1fm2A00 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.59 46.0 3.99e-01 83.0% 73.0%
2hz8A00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.59 41.0 4.00e-01 74.0% 69.6%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.57 45.0 4.24e-01 85.0% 72.4%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.56 33.0 4.03e-01 92.0% 93.5%
6xpdA01 1.20.1510.10 Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain 0.54 48.0 3.84e-01 99.0% 62.9%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 46.0 4.10e-01 95.0% 73.1%
1ny9A00 1.10.490.50 Mainly Alpha › Orthogonal Bundle › Globin-like › Antibiotic binding domain of TipA-like multidrug resistance regulators 0.54 45.0 4.69e-01 94.0% 96.8%
1e7pC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.53 42.0 3.15e-01 85.0% 83.1%
4d7rA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.53 41.0 4.40e-01 99.0% 100.0%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.52 42.0 4.07e-01 93.0% 78.1%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 3.05e-01 100.0% 36.7%
2z8fB02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 39.0 2.99e-01 100.0% 34.9%
1rt8A04 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.51 33.0 3.25e-01 94.0% 60.6%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.51 45.0 2.97e-01 99.0% 89.0%
2e87A01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 36.0 3.19e-01 77.0% 71.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3733465 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.75 69.0 4.42e-01 100.0% 25.0%
3501226 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 62.0 4.47e-01 100.0% 33.2%
4599784 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.74 48.0 5.63e-01 70.0% 100.0%
3592177 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.74 49.0 5.64e-01 72.0% 97.1%
3221764 603.2.1.0 ↗ alpha bundles › STAT-like › STAT › STAT 0.72 49.0 5.36e-01 74.0% 86.3%
3694147 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 63.0 4.78e-01 100.0% 45.1%
3232181 109.4.1.891 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_HEATR1 0.69 62.0 4.59e-01 100.0% 53.7%
3697513 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.68 61.0 4.49e-01 99.0% 61.9%
3727620 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 61.0 4.96e-01 99.0% 97.3%
3472717 109.4.1.442 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › THOC2_N 0.67 59.0 4.07e-01 100.0% 29.1%
4030366 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 60.0 3.49e-01 100.0% 12.1%
3616671 604.1.1.155 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29142 0.66 45.0 4.63e-01 74.0% 74.7%
4233690 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.63 43.0 3.80e-01 75.0% 46.7%
3706387 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.63 52.0 5.19e-01 97.0% 83.8%
3624728 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 44.0 4.75e-01 77.0% 91.8%
4027904 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.60 44.0 4.25e-01 77.0% 69.1%
4290083 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.59 42.0 3.74e-01 86.0% 50.3%
4524825 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.58 41.0 4.18e-01 73.0% 75.8%
3610552 4156.1.1.1 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 0.58 44.0 3.85e-01 82.0% 96.2%
3233324 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 40.0 4.25e-01 72.0% 100.0%
3729571 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 48.0 4.19e-01 96.0% 80.0%
3645754 611.7.1.16 ↗ alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › PUB2_N 0.53 48.0 4.20e-01 100.0% 72.7%
3590747 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.52 42.0 3.37e-01 88.0% 79.0%
3472906 601.1.2.2 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ 0.51 46.0 3.72e-01 99.0% 67.9%
3243832 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.51 40.0 2.97e-01 87.0% 94.2%
3555924 386.1.1.225 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › BTB 0.50 33.0 3.13e-01 81.0% 55.0%