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hypothetical_protein_PGCG_00358

Euk-Vir

Phaeocystis_globosa_virus

hypothetical_protein_PGCG_00358__YP_008052676__Phaeocystis_globosa_virus__251749

Identity

Accession:
YP_008052676 ↗
Protein ID:
hypothetical_protein_PGCG_00358
Kingdom:
euk

Quality

70.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prymnesiovirus› Phaeocystis_globosa_virus

TaxID: 251749

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 65-147
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e6oA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.92 61.0 6.07e-01 100.0% 65.5%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.88 59.0 6.07e-01 100.0% 72.2%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.88 55.0 6.78e-01 95.2% 100.0%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.87 58.0 6.64e-01 100.0% 91.8%
2lefA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.86 58.0 5.72e-01 100.0% 66.3%
3fghA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.84 53.0 5.84e-01 100.0% 79.1%
2d7lA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.84 53.0 6.44e-01 94.0% 100.0%
4akgA16 1.10.8.720 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Region D6 of dynein motor 0.67 46.0 3.63e-01 73.5% 35.2%
1lvlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 56.0 4.21e-01 100.0% 56.2%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 39.0 3.55e-01 84.3% 44.7%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 33.0 3.28e-01 85.5% 46.6%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.61 44.0 3.84e-01 75.9% 75.4%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 41.0 3.97e-01 75.9% 67.4%
3udcA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 44.0 3.99e-01 85.5% 63.5%
1aluA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 38.0 3.12e-01 72.3% 66.2%
3nrtA00 6.20.350.10 Special › Other non-globular › Actin; Chain A, domain 4 › 0.52 43.0 4.21e-01 94.0% 84.9%
2d5vA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 33.0 3.44e-01 91.6% 69.6%
2xzmP00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.23e-01 80.7% 89.9%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.51 36.0 3.77e-01 100.0% 82.4%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.51 42.0 3.68e-01 98.8% 89.4%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3229457 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.93 59.0 5.91e-01 100.0% 63.5%
3519620 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.93 60.0 5.36e-01 100.0% 50.0%
3997887 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.93 61.0 6.89e-01 100.0% 86.2%
4102250 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.93 62.0 6.35e-01 100.0% 71.2%
3571945 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.92 59.0 5.63e-01 100.0% 57.9%
3916833 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.91 61.0 6.27e-01 100.0% 71.2%
None — 0.91 56.0 6.85e-01 94.0% 94.5%
3999351 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.91 63.0 5.47e-01 100.0% 50.0%
3858252 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.91 59.0 6.41e-01 100.0% 78.6%
3477670 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.90 64.0 7.21e-01 95.2% 92.3%
3419147 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.90 60.0 5.88e-01 100.0% 63.3%
3506838 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.89 60.0 5.69e-01 100.0% 60.0%
3470186 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.89 60.0 5.81e-01 100.0% 63.3%
3223068 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.88 57.0 6.64e-01 98.8% 91.7%
3572021 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.88 56.0 6.30e-01 100.0% 83.1%
3177211 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.88 63.0 6.30e-01 100.0% 72.9%
3992404 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.87 57.0 5.66e-01 100.0% 64.7%
3757366 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.87 59.0 6.08e-01 100.0% 72.5%
3579632 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.86 58.0 6.32e-01 100.0% 83.8%
3390901 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.86 58.0 4.19e-01 100.0% 27.8%
3431874 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.85 58.0 5.75e-01 100.0% 68.2%
3496552 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.82 56.0 5.48e-01 100.0% 65.6%
3391114 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.81 49.0 5.50e-01 95.2% 78.5%
3486556 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.81 56.0 5.56e-01 100.0% 69.4%
3712151 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.80 55.0 5.97e-01 100.0% 84.3%
3720192 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.79 54.0 5.91e-01 100.0% 84.3%
3730112 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.76 63.0 5.05e-01 100.0% 48.3%
4015915 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.72 56.0 5.75e-01 100.0% 86.3%
3998355 190.1.1.25 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › PF29135 0.71 55.0 6.00e-01 100.0% 95.7%
3738741 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.71 58.0 5.95e-01 100.0% 91.3%
3738224 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.70 51.0 5.24e-01 100.0% 78.8%
3735029 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.63 47.0 4.03e-01 78.3% 74.6%
3784779 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.63 49.0 5.17e-01 100.0% 94.7%
3691416 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.61 45.0 3.67e-01 95.2% 41.9%
4857531 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 50.0 4.26e-01 96.4% 63.9%
3511084 3922.1.1.225 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF842 0.59 46.0 4.09e-01 86.7% 92.8%
5049531 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.58 55.0 4.07e-01 100.0% 91.8%
3738109 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.57 47.0 4.52e-01 100.0% 80.0%
3756047 192.29.1.243 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Fy-3 0.57 46.0 4.48e-01 88.0% 93.3%
4034208 1075.3.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1+BPD_transp_1_N 0.57 49.0 3.37e-01 97.6% 51.8%
3232732 601.14.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin 0.56 39.0 3.68e-01 71.1% 62.0%
3784780 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.53 49.0 4.52e-01 100.0% 80.0%
3694789 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.53 37.0 3.28e-01 94.0% 47.7%
3626808 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.51 36.0 3.85e-01 100.0% 90.0%