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hypothetical_protein_PmNV_020
Euk-VirPenaeus_monodon_nudivirus
hypothetical_protein_PmNV_020__YP_009051858__Penaeus_monodon_nudivirus__1529056
Identity
- Accession:
- YP_009051858 ↗
- Protein ID:
- hypothetical_protein_PmNV_020
- Kingdom:
- euk
Quality
72.7
mean pLDDT
Taxonomy
TaxID: 1529056
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-200
Domain cluster:
rep: Hypothetical_protein_SPPV_50__NP_659626__Sheeppox_virus__10266__D1-82_143-236
D2
medium
residues 201-267_279-320
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1op1A00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.59 | 42.0 | 4.69e-01 | 98.2% | 98.8% |
| 3owaA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 49.0 | 4.20e-01 | 92.7% | 77.8% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.57 | 34.0 | 3.53e-01 | 89.0% | 63.6% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.56 | 36.0 | 3.95e-01 | 82.6% | 80.5% |
| 4akgA02 | 1.20.140.100 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain | 0.56 | 48.0 | 4.17e-01 | 93.6% | 85.1% |
| 3rguB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.56 | 38.0 | 4.19e-01 | 88.1% | 88.5% |
| 2qkwA00 | 1.20.1270.140 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto | 0.56 | 42.0 | 4.36e-01 | 87.2% | 86.1% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.55 | 41.0 | 4.26e-01 | 89.9% | 84.2% |
| 2xseA00 | 1.20.120.1440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain | 0.54 | 44.0 | 3.88e-01 | 86.2% | 59.1% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.53 | 39.0 | 3.65e-01 | 78.9% | 80.9% |
| 8cdaB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 44.0 | 3.92e-01 | 93.6% | 82.4% |
| 2kbwA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.51 | 42.0 | 3.78e-01 | 89.0% | 86.9% |
| 1b0bA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 35.0 | 3.26e-01 | 70.6% | 85.8% |
| 1m6nA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.50 | 38.0 | 3.54e-01 | 83.5% | 64.4% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4018322 | 611.7.1.0 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain | 0.63 | 55.0 | 4.95e-01 | 93.6% | 92.4% |
| 3246383 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.61 | 38.0 | 4.52e-01 | 88.1% | 97.1% |
| 3684945 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.59 | 51.0 | 4.72e-01 | 93.6% | 92.1% |
| 4013524 | 611.9.1.0 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain | 0.59 | 50.0 | 4.48e-01 | 91.7% | 94.0% |
| 3384541 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.59 | 37.0 | 3.28e-01 | 89.9% | 43.9% |
| 3788700 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.58 | 48.0 | 3.56e-01 | 90.8% | 42.1% |
| 3774553 | 223.2.1.22 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin | 0.58 | 45.0 | 3.46e-01 | 83.5% | 91.9% |
| 3441543 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.57 | 46.0 | 4.65e-01 | 89.0% | 86.4% |
| 3433899 | 611.2.1.2 ↗ | alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) › Rx_N | 0.56 | 48.0 | 4.41e-01 | 93.6% | 97.1% |
| 3175548 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.56 | 42.0 | 3.56e-01 | 78.9% | 93.9% |
| 5007279 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.55 | 42.0 | 4.35e-01 | 89.0% | 86.7% |
| 3721449 | 7076.1.1.0 ↗ | 0.55 | 40.0 | 4.48e-01 | 91.7% | 100.0% | |
| 3580728 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.54 | 40.0 | 4.17e-01 | 88.1% | 85.0% |
| 3221996 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.53 | 42.0 | 3.79e-01 | 85.3% | 94.0% |
| 3701228 | 4323.1.1.2 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V-ATPase_C | 0.52 | 43.0 | 3.68e-01 | 89.0% | 76.6% |
| 3362557 | 4177.1.1.8 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 | 0.51 | 41.0 | 3.33e-01 | 86.2% | 79.5% |
| 5061618 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.51 | 39.0 | 3.05e-01 | 79.8% | 58.3% |
| 3456226 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.51 | 44.0 | 3.37e-01 | 95.4% | 53.5% |
| 3435307 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.51 | 43.0 | 3.72e-01 | 91.7% | 62.9% |
D3
medium
residues 321-380_393-414