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hypothetical_protein_PmNV_078
Euk-VirPenaeus_monodon_nudivirus
hypothetical_protein_PmNV_078__YP_009051916__Penaeus_monodon_nudivirus__1529056
Identity
- Accession:
- YP_009051916 ↗
- Protein ID:
- hypothetical_protein_PmNV_078
- Kingdom:
- euk
Quality
70.7
mean pLDDT
Taxonomy
TaxID: 1529056
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-215
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1noyB02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.75 | 70.0 | 6.35e-01 | 98.3% | 100.0% |
| 2gv9A03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.74 | 69.0 | 6.29e-01 | 97.2% | 100.0% |
| 4fvmA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.74 | 69.0 | 6.21e-01 | 98.9% | 100.0% |
| 3iayA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.74 | 69.0 | 6.42e-01 | 98.3% | 100.0% |
| 4qclA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.73 | 70.0 | 5.92e-01 | 100.0% | 83.4% |
| 1q8iA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.68 | 63.0 | 6.25e-01 | 97.2% | 100.0% |
| 1d5aA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.68 | 64.0 | 5.89e-01 | 100.0% | 90.8% |
| 1x9mA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.65 | 61.0 | 5.52e-01 | 97.7% | 80.5% |
| 3bzcA03 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.65 | 46.0 | 5.28e-01 | 98.3% | 100.0% |
| 4ifeA02 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.58 | 53.0 | 4.86e-01 | 98.3% | 89.0% |
| 4chgA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.56 | 35.0 | 3.97e-01 | 95.5% | 82.0% |
| 2rbgA00 | 3.40.50.11100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 34.0 | 3.94e-01 | 98.3% | 88.7% |
| 1q3kA00 | 3.40.50.10310 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Creatininase | 0.51 | 46.0 | 4.04e-01 | 98.9% | 86.9% |
| 3ig4A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.51 | 39.0 | 4.01e-01 | 80.1% | 91.2% |
| 3no4A00 | 3.40.50.10310 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Creatininase | 0.50 | 45.0 | 3.98e-01 | 98.9% | 82.2% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4432985 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.75 | 70.0 | 6.65e-01 | 100.0% | 86.0% |
| 3256261 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.74 | 70.0 | 6.08e-01 | 98.9% | 85.9% |
| 3692564 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.74 | 70.0 | 5.19e-01 | 100.0% | 58.0% |
| 4933243 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.74 | 68.0 | 6.87e-01 | 99.4% | 97.1% |
| 4874454 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.74 | 70.0 | 5.98e-01 | 100.0% | 84.2% |
| None | — | 0.74 | 70.0 | 5.33e-01 | 99.4% | 61.6% | |
| 3797773 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.74 | 70.0 | 5.75e-01 | 100.0% | 79.3% |
| 3627091 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 69.0 | 6.15e-01 | 100.0% | 85.8% |
| 2958185 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.73 | 69.0 | 5.83e-01 | 100.0% | 84.7% |
| 1790898 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.73 | 70.0 | 5.92e-01 | 100.0% | 82.7% |
| 4944521 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 68.0 | 6.38e-01 | 97.7% | 99.5% |
| 5066483 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.73 | 66.0 | 6.76e-01 | 98.3% | 98.2% |
| 3492151 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.72 | 68.0 | 5.44e-01 | 100.0% | 80.0% |
| 3206356 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.72 | 68.0 | 5.12e-01 | 100.0% | 59.5% |
| 3893443 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.72 | 69.0 | 6.33e-01 | 100.0% | 81.4% |
| 5055213 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.72 | 67.0 | 6.59e-01 | 98.9% | 91.5% |
| 3684974 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.72 | 68.0 | 4.47e-01 | 100.0% | 62.4% |
| 3605750 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.72 | 68.0 | 4.20e-01 | 100.0% | 79.8% |
| 4932453 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.72 | 68.0 | 5.45e-01 | 100.0% | 98.4% |
| None | — | 0.72 | 67.0 | 4.24e-01 | 98.9% | 66.9% | |
| 3802227 | 2484.1.1.197 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.72 | 68.0 | 4.22e-01 | 100.0% | 47.0% |
| None | — | 0.71 | 67.0 | 4.24e-01 | 100.0% | 48.6% | |
| 4649118 | 2484.1.1.197 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.71 | 67.0 | 5.07e-01 | 100.0% | 53.4% |
| 5040509 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 68.0 | 5.29e-01 | 100.0% | 86.7% |
| 3266685 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 67.0 | 4.00e-01 | 100.0% | 33.4% |
| 3784398 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 67.0 | 5.83e-01 | 99.4% | 91.8% |
| 3584771 | 2484.1.1.197 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.71 | 67.0 | 5.55e-01 | 100.0% | 80.3% |
| 3619240 | 304.48.1.59 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.71 | 67.0 | 4.28e-01 | 99.4% | 27.6% |
| 5080048 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.71 | 67.0 | 6.76e-01 | 98.9% | 99.4% |
| 4966854 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 67.0 | 5.19e-01 | 100.0% | 84.4% |
| 3798596 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 67.0 | 6.12e-01 | 100.0% | 93.8% |
| 5029084 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 67.0 | 6.11e-01 | 100.0% | 91.1% |
| 5076410 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 67.0 | 5.14e-01 | 100.0% | 51.6% |
| 4958553 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 67.0 | 6.13e-01 | 98.9% | 99.1% |
| 4492006 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 67.0 | 5.71e-01 | 100.0% | 70.0% |
| 5054032 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 67.0 | 5.12e-01 | 100.0% | 61.1% |
| 5069333 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 67.0 | 5.11e-01 | 100.0% | 49.9% |
| 5023018 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 65.0 | 6.09e-01 | 97.2% | 100.0% |
| 4024811 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 67.0 | 5.61e-01 | 100.0% | 86.1% |
| 4982659 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.70 | 66.0 | 5.18e-01 | 100.0% | 89.7% |
| 4953654 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.70 | 66.0 | 5.23e-01 | 100.0% | 71.5% |
| 4942685 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.70 | 66.0 | 4.70e-01 | 100.0% | 74.8% |
| 5035328 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.70 | 66.0 | 5.93e-01 | 100.0% | 84.7% |
| 4504110 | 2484.1.1.197 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.70 | 66.0 | 4.88e-01 | 100.0% | 56.9% |
| 4029124 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.69 | 64.0 | 5.48e-01 | 97.2% | 79.9% |
| 4452101 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.68 | 64.0 | 5.93e-01 | 100.0% | 89.5% |
| 4282509 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 64.0 | 4.39e-01 | 100.0% | 35.6% |
| 3683989 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.67 | 63.0 | 5.90e-01 | 99.4% | 91.4% |
| 4891100 | 2484.1.1.161 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.67 | 63.0 | 5.42e-01 | 100.0% | 81.0% |
| 4038287 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.67 | 50.0 | 5.61e-01 | 100.0% | 100.0% |
| 5035011 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.63 | 44.0 | 3.97e-01 | 71.6% | 59.1% |
| 5041307 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 48.0 | 4.18e-01 | 98.9% | 55.0% |
| 3584051 | 2484.1.1.205 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 | 0.59 | 50.0 | 5.02e-01 | 100.0% | 89.1% |
| 4977731 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 41.0 | 3.25e-01 | 71.0% | 38.2% |
| 5044376 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.55 | 47.0 | 3.80e-01 | 100.0% | 49.2% |
| 5048995 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.54 | 51.0 | 3.88e-01 | 100.0% | 54.7% |