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hypothetical_protein_PsunGV_gp049

Euk-Vir

Pseudalatia_unipuncta_granulovirus

hypothetical_protein_PsunGV_gp049__YP_003422388__Pseudalatia_unipuncta_granulovirus__36355

Identity

Accession:
YP_003422388 ↗
Protein ID:
hypothetical_protein_PsunGV_gp049
Kingdom:
euk

Quality

55.8 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Pseudalatia_unipuncta_granulovirus

TaxID: 36355

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 329-358_441-560
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07282.19 best Cas12f1-like_TNB 56.6 3.10e-15 46.0% 80.0%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.66 28.0 3.41e-01 100.0% 58.6%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 51.0 5.34e-01 100.0% 98.6%
3aapA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 45.0 4.91e-01 100.0% 97.6%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.57 29.0 3.58e-01 93.3% 78.0%
2ymbA00 3.30.870.30 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › MITD, C-terminal phospholipase D-like domain 0.57 36.0 3.60e-01 90.0% 61.4%
1k7cA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 49.0 4.28e-01 100.0% 97.0%
1uhvA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 43.0 3.34e-01 86.7% 85.2%
2l5oA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 33.0 3.32e-01 98.7% 60.0%
8gr2A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 47.0 4.36e-01 98.7% 100.0%
3bedA00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.53 39.0 4.17e-01 100.0% 89.2%
4ga4A02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.53 48.0 3.98e-01 100.0% 83.1%
5nblA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 46.0 4.56e-01 100.0% 91.0%
1bwpA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 46.0 4.16e-01 100.0% 83.5%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 46.0 4.15e-01 100.0% 97.1%
6ndsA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 41.0 3.27e-01 85.3% 93.1%
4d2iA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 3.18e-01 78.0% 75.6%
1jx7A00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.50 34.0 3.79e-01 100.0% 87.9%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5072202 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.81 76.0 6.95e-01 100.0% 90.5%
4975908 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.80 76.0 6.59e-01 100.0% 92.7%
5075582 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.80 75.0 6.40e-01 100.0% 90.0%
5055179 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.79 74.0 6.54e-01 100.0% 93.3%
4946534 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.79 74.0 6.03e-01 100.0% 83.8%
5011867 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.78 74.0 7.09e-01 99.3% 98.2%
4007799 2484.1.1.211 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.78 74.0 6.76e-01 100.0% 95.8%
5073213 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.76 71.0 6.20e-01 100.0% 90.5%
3587862 2484.1.1.211 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.76 71.0 6.36e-01 99.3% 97.5%
5005094 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.75 71.0 6.41e-01 99.3% 95.4%
3955489 2484.1.1.211 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.74 69.0 6.12e-01 99.3% 96.7%
5051266 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.73 69.0 5.91e-01 100.0% 84.0%
4659593 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.70 59.0 6.16e-01 100.0% 95.0%
3992738 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 21.0 3.86e-01 84.7% 93.3%
4391834 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.67 59.0 6.04e-01 100.0% 97.2%
1323679 4294.1.1.1 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.67 20.0 3.76e-01 86.7% 95.1%
4117581 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.67 58.0 5.98e-01 100.0% 99.3%
None — 0.64 36.0 3.63e-01 100.0% 53.5%
3781316 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 41.0 4.62e-01 100.0% 84.3%
None — 0.63 46.0 3.99e-01 100.0% 49.6%
None — 0.62 46.0 4.01e-01 100.0% 51.8%
4220259 2484.1.1.31 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase 0.62 51.0 5.34e-01 100.0% 96.3%
4030512 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.61 40.0 3.62e-01 100.0% 47.1%
3928378 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 30.0 3.88e-01 94.7% 82.4%
4288654 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.60 37.0 3.78e-01 100.0% 62.1%
3895050 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.59 36.0 3.52e-01 100.0% 52.9%
3944443 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.58 53.0 4.48e-01 100.0% 98.8%
5065620 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 38.0 3.41e-01 76.7% 47.3%
3414426 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 38.0 3.35e-01 100.0% 45.3%
4972573 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 39.0 2.90e-01 74.7% 83.2%
3263189 2007.2.5.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase 0.52 40.0 3.79e-01 80.0% 66.5%
4993876 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.52 39.0 4.07e-01 98.0% 87.4%
3330674 2005.1.1.41 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C 0.51 42.0 4.13e-01 95.3% 81.2%
3506784 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.51 32.0 2.90e-01 98.7% 44.7%
3978398 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 34.0 3.24e-01 98.7% 57.7%
3616473 2484.1.1.99 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.50 45.0 4.17e-01 100.0% 82.1%
D2 high residues 363-425
PDB
D3 medium residues 141-225
PDB
Domain cluster: rep: hypothetical_protein__YP_009506113__Trichoplusia_ni_granulovirus_LBIV-12__1916701__D151-228
D4 medium residues 226-258_287-325
PDB