←Back to structures
hypothetical_protein_RHVP.R2
Euk-VirCricetid_gammaherpesvirus_2
hypothetical_protein_RHVP.R2__YP_004207834__Cricetid_gammaherpesvirus_2__1605972
Identity
- Accession:
- YP_004207834 ↗
- Protein ID:
- hypothetical_protein_RHVP.R2
- Kingdom:
- euk
Quality
82.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Rhadinovirus›
Cricetid_gammaherpesvirus_2
TaxID: 1605972
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-76
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00129.24 best | MHC_I | 93.8 | 1.30e-26 | 100.0% | 41.3% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a6zA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.90 | 84.0 | 6.15e-01 | 100.0% | 41.9% |
| 4iiqC02 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.88 | 82.0 | 6.05e-01 | 100.0% | 42.1% |
| 3d2uE01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.88 | 82.0 | 5.91e-01 | 100.0% | 44.7% |
| 7zqiA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.86 | 80.0 | 5.93e-01 | 100.0% | 42.1% |
| 3jvgA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.85 | 79.0 | 5.89e-01 | 100.0% | 44.5% |
| 3dbxA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.85 | 79.0 | 5.81e-01 | 100.0% | 42.8% |
| 1kcgC00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.85 | 78.0 | 5.87e-01 | 100.0% | 44.1% |
| 1lqvB00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.85 | 78.0 | 5.83e-01 | 100.0% | 46.2% |
| 1fneA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.85 | 69.0 | 6.80e-01 | 100.0% | 82.3% |
| 3fruA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.84 | 76.0 | 5.69e-01 | 100.0% | 42.4% |
| 1a6aB01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.83 | 75.0 | 7.12e-01 | 100.0% | 85.4% |
| 4d8pB01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.82 | 74.0 | 6.67e-01 | 100.0% | 74.5% |
| 1k8iB01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.82 | 74.0 | 6.90e-01 | 100.0% | 87.9% |
| 1zs8A01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.74 | 64.0 | 4.90e-01 | 100.0% | 42.1% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.74 | 61.0 | 6.08e-01 | 100.0% | 88.3% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.72 | 43.0 | 3.55e-01 | 100.0% | 33.1% |
| 1hyrC01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.70 | 61.0 | 4.62e-01 | 100.0% | 41.1% |
| 4e4tA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.64 | 46.0 | 3.44e-01 | 100.0% | 28.7% |
| 4mamB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.64 | 45.0 | 3.41e-01 | 100.0% | 29.8% |
| 1kjqB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.64 | 45.0 | 3.37e-01 | 100.0% | 28.9% |
| 3k5iA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 45.0 | 3.35e-01 | 100.0% | 29.3% |
| 3orqA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.61 | 43.0 | 3.13e-01 | 100.0% | 26.1% |
| 1y9kA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 42.0 | 3.70e-01 | 73.3% | 53.1% |
| 1yvuA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 47.0 | 3.49e-01 | 97.3% | 91.1% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 45.0 | 3.73e-01 | 93.3% | 91.1% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 38.0 | 3.52e-01 | 72.0% | 74.5% |
| 1euvA02 | 3.30.310.130 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related | 0.55 | 43.0 | 3.97e-01 | 90.7% | 79.0% |
| 6a97C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.54 | 45.0 | 3.86e-01 | 97.3% | 81.7% |
| 7uvpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 41.0 | 2.87e-01 | 85.3% | 26.4% |
| 2fl4A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 39.0 | 3.55e-01 | 80.0% | 58.7% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 3.14e-01 | 98.7% | 88.8% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 37.0 | 3.88e-01 | 92.0% | 87.9% |
| 4jgjA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 33.0 | 3.08e-01 | 85.3% | 49.0% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3773523 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.93 | 80.0 | 6.07e-01 | 96.0% | 43.2% |
| 3856565 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.93 | 89.0 | 6.37e-01 | 100.0% | 40.5% |
| 3881032 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.92 | 87.0 | 6.28e-01 | 100.0% | 42.7% |
| 3863169 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.92 | 88.0 | 6.40e-01 | 100.0% | 42.9% |
| 75587 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.90 | 85.0 | 6.18e-01 | 100.0% | 41.4% |
| 3753212 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.89 | 82.0 | 5.90e-01 | 100.0% | 38.9% |
| 3847239 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.88 | 83.0 | 6.01e-01 | 100.0% | 40.5% |
| 4836497 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.88 | 82.0 | 6.02e-01 | 100.0% | 41.9% |
| 3907478 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.88 | 82.0 | 6.00e-01 | 100.0% | 42.2% |
| 3881500 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.88 | 81.0 | 5.99e-01 | 100.0% | 42.2% |
| 1219772 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.87 | 81.0 | 5.93e-01 | 100.0% | 45.7% |
| 138051 | 233.1.1.6 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 | 0.85 | 79.0 | 5.88e-01 | 100.0% | 44.3% |
| 169555 | 233.1.1.6 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 | 0.85 | 79.0 | 5.80e-01 | 100.0% | 42.5% |
| 3537454 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.85 | 78.0 | 5.80e-01 | 100.0% | 41.7% |
| 3886813 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.85 | 76.0 | 7.31e-01 | 100.0% | 85.9% |
| 3548180 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.85 | 78.0 | 5.71e-01 | 100.0% | 40.5% |
| 4271645 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.84 | 77.0 | 5.69e-01 | 100.0% | 40.5% |
| 3521727 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.84 | 77.0 | 5.66e-01 | 100.0% | 40.5% |
| 3916082 | 233.1.1.2 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta | 0.84 | 76.0 | 6.64e-01 | 100.0% | 69.1% |
| 3550081 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.84 | 76.0 | 5.59e-01 | 100.0% | 39.5% |
| 2528050 | 233.1.1.2 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta | 0.83 | 74.0 | 7.22e-01 | 98.7% | 90.4% |
| 4873615 | 233.1.1.2 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta | 0.83 | 75.0 | 7.02e-01 | 100.0% | 82.6% |
| 3852409 | 233.1.1.2 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta | 0.83 | 75.0 | 6.55e-01 | 100.0% | 72.7% |
| 3846350 | 233.1.1.3 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha | 0.82 | 67.0 | 6.72e-01 | 100.0% | 86.7% |
| 3880503 | 233.1.1.2 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta | 0.82 | 74.0 | 6.83e-01 | 100.0% | 81.1% |
| 3859354 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.82 | 76.0 | 5.61e-01 | 100.0% | 41.7% |
| 4874050 | 233.1.1.2 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta | 0.82 | 74.0 | 6.57e-01 | 100.0% | 72.4% |
| 2539221 | 233.1.1.2 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta | 0.82 | 73.0 | 6.27e-01 | 100.0% | 63.9% |
| 3758349 | 233.1.1.5 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_2 | 0.81 | 75.0 | 5.68e-01 | 100.0% | 46.7% |
| 3901603 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.79 | 71.0 | 5.71e-01 | 100.0% | 52.9% |
| 3842370 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.78 | 71.0 | 5.34e-01 | 100.0% | 42.9% |
| 3906288 | 233.1.1.3 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha | 0.78 | 67.0 | 6.62e-01 | 97.3% | 88.7% |
| 3898301 | 233.1.1.2 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta | 0.78 | 69.0 | 6.43e-01 | 100.0% | 78.9% |
| 3893642 | 233.1.1.2 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta | 0.78 | 69.0 | 6.68e-01 | 100.0% | 89.4% |
| 3771322 | 233.1.1.3 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha | 0.76 | 62.0 | 5.70e-01 | 100.0% | 68.4% |
| 3761968 | 233.1.1.5 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_2 | 0.76 | 67.0 | 5.13e-01 | 100.0% | 42.9% |
| 3902981 | 233.1.1.2 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta | 0.76 | 67.0 | 6.12e-01 | 100.0% | 90.0% |
| 3553889 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.75 | 68.0 | 4.97e-01 | 100.0% | 41.0% |
| 3909399 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.74 | 65.0 | 6.42e-01 | 98.7% | 93.8% |
| 299936 | 233.1.1.3 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha | 0.73 | 60.0 | 5.73e-01 | 100.0% | 77.3% |
| 3781848 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.63 | 39.0 | 4.09e-01 | 74.7% | 67.1% |
| 3830856 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.57 | 27.0 | 3.32e-01 | 97.3% | 71.1% |
| 5074132 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.56 | 47.0 | 4.14e-01 | 98.7% | 100.0% |
| 5072842 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.55 | 42.0 | 3.88e-01 | 85.3% | 63.0% |
| 1595160 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 40.0 | 3.31e-01 | 85.3% | 90.0% |
| 4935893 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.52 | 38.0 | 2.44e-01 | 80.0% | 25.3% |
| 1396826 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.51 | 37.0 | 3.86e-01 | 92.0% | 86.6% |
| 3989826 | 213.1.1.7 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB | 0.50 | 38.0 | 3.17e-01 | 85.3% | 64.0% |