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hypothetical_protein_SB87_gp080

Euk-Vir

Parapoxvirus_red_deer_HL953

hypothetical_protein_SB87_gp080__YP_009112821__Parapoxvirus_red_deer_HL953__1579460

Identity

Accession:: YP_009112821 ↗
Protein ID:: hypothetical_protein_SB87_gp080
Kingdom:: euk

Quality

91.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Parapoxvirus› Parapoxvirus_red_deer/HL953

TaxID: 1579460

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-120

PDB

Domain cluster: rep: virion_morphogenesis_core_protein__YP_010085396__Eastern_grey_kangaroopox_virus__2042482__D1-120

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04924.18 best	Pox_A6	177.1	7.30e-52	100.0%	32.4%

D2 medium residues 132-186

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04924.18 best	Pox_A6	80.1	2.20e-22	100.0%	14.9%

CATH (32)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kfwX03	1.20.58.1460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.78	64.0	5.77e-01	100.0%	65.8%
1vf6C00	1.10.287.650	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain	0.71	50.0	5.22e-01	74.5%	80.4%
1y6xA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.70	51.0	4.44e-01	80.0%	55.2%
2qf9A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.69	54.0	4.00e-01	89.1%	79.5%
4m70I00	1.20.5.4130	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.69	52.0	4.20e-01	81.8%	55.6%
7jplA01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.69	53.0	4.21e-01	85.5%	41.0%
4iggB02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.68	58.0	4.58e-01	100.0%	90.1%
4l0rB00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.68	50.0	4.63e-01	81.8%	63.0%
4errB00	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.67	51.0	4.56e-01	92.7%	56.6%
1s35A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.66	55.0	4.61e-01	96.4%	75.2%
2r9iA00	1.10.287.80	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain	0.65	48.0	4.52e-01	83.6%	84.5%
4wpeA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.65	48.0	3.09e-01	81.8%	34.9%
2pmrA00	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.64	49.0	4.45e-01	85.5%	61.8%
3hr0B01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.64	47.0	4.26e-01	81.8%	69.6%
3behB01	1.20.120.540	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels	0.63	52.0	4.23e-01	100.0%	82.1%
1zpyA00	6.10.140.1960	Special › Helix non-globular › Helix Hairpins ›	0.62	50.0	4.32e-01	90.9%	65.9%
4abmD00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.62	48.0	4.33e-01	85.5%	61.0%
1zhcA00	6.10.280.50	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.62	45.0	4.20e-01	83.6%	75.0%
3bvoA02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.62	50.0	4.46e-01	96.4%	74.4%
6a7hA01	1.20.140.180	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 ›	0.62	50.0	3.99e-01	100.0%	68.2%
1x4tA01	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.62	46.0	4.61e-01	92.7%	79.3%
1o9gA02	1.10.287.540	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.61	44.0	4.81e-01	87.3%	97.7%
2gv9A05	1.10.287.690	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain	0.61	43.0	4.23e-01	81.8%	71.2%
2gw1A02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.61	48.0	2.98e-01	90.9%	67.5%
4wzxA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.60	47.0	4.42e-01	94.5%	73.3%
2e5yA02	1.20.5.440	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain	0.60	43.0	4.61e-01	81.8%	97.8%
4dnjA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.59	50.0	3.06e-01	100.0%	51.1%
3amiA02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.58	43.0	2.94e-01	80.0%	43.2%
2lw1A00	1.10.287.380	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain	0.58	42.0	3.80e-01	83.6%	58.8%
1m56C01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.57	42.0	4.02e-01	83.6%	66.7%
4z4qA04	1.10.268.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3	0.56	46.0	3.96e-01	92.7%	100.0%
2r0rB00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.50	43.0	3.89e-01	100.0%	100.0%

ECOD (34)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5071514	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.75	64.0	5.81e-01	96.4%	72.0%
3320047	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.74	50.0	3.49e-01	70.9%	22.3%
1822527	101.1.2.135 ↗	alpha arrays › HTH › HTH › winged helix domain › MarR_2	0.71	54.0	4.03e-01	85.5%	31.5%
4080971	192.6.1.0 ↗	alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain	0.71	50.0	5.45e-01	87.3%	91.1%
4127368	192.6.1.0 ↗	alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain	0.70	51.0	5.32e-01	83.6%	88.0%
4001318	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.70	60.0	5.42e-01	96.4%	82.7%
3672410	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.70	54.0	4.56e-01	85.5%	66.3%
4248599	192.6.1.1 ↗	alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE	0.69	51.0	5.42e-01	87.3%	93.8%
3708624	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.69	52.0	2.92e-01	83.6%	6.7%
3699638	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.69	51.0	2.91e-01	83.6%	6.9%
3961347	150.5.1.53 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE	0.69	49.0	4.33e-01	81.8%	50.6%
3918098	604.6.1.57 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › Not3	0.69	56.0	4.66e-01	96.4%	65.7%
4955780	3939.1.1.387 ↗	alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › DUF4349	0.69	52.0	4.95e-01	83.6%	70.8%
3738358	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.68	57.0	5.22e-01	100.0%	72.0%
4965632	192.7.1.85 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › DUF4349	0.68	50.0	4.86e-01	83.6%	70.8%
4950300	4970.1.1.0 ↗	alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I	0.67	50.0	4.92e-01	83.6%	76.7%
5002533	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.66	45.0	3.71e-01	74.5%	38.1%
3073109	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.66	49.0	4.55e-01	83.6%	67.6%
4156333	109.4.1.206 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › YfiO	0.66	49.0	3.67e-01	83.6%	30.7%
3298870	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.65	48.0	4.00e-01	83.6%	43.8%
3242572	601.14.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin	0.65	54.0	3.90e-01	98.2%	89.1%
3934585	3755.3.1.465 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A	0.64	55.0	4.11e-01	100.0%	86.0%
4041347	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.64	49.0	3.97e-01	85.5%	71.8%
3297770	622.4.1.26 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA	0.64	47.0	4.20e-01	83.6%	54.1%
4247116	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.63	47.0	3.87e-01	83.6%	41.8%
4979981	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.63	47.0	3.86e-01	83.6%	41.8%
3187707	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.63	51.0	3.06e-01	98.2%	28.6%
4268056	192.6.1.1 ↗	alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE	0.63	46.0	4.69e-01	83.6%	83.6%
3917888	192.7.1.0 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm	0.63	46.0	3.73e-01	81.8%	40.0%
4179301	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.62	45.0	3.74e-01	81.8%	41.8%
4946099	3843.1.1.0 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K	0.62	49.0	4.31e-01	89.1%	57.8%
3731364	3922.1.1.137 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › HisKA	0.61	45.0	4.34e-01	83.6%	70.8%
4042986	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.60	48.0	3.99e-01	98.2%	49.0%
4174467	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.57	41.0	3.68e-01	83.6%	53.3%

D3 medium residues 187-260

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04924.18 best	Pox_A6	82.7	3.70e-23	100.0%	19.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1900588	144.1.1.0 ↗	alpha arrays › PGBD-like › PGBD-like › PGBD-like	0.56	28.0	2.72e-01	77.0%	42.0%

D4 medium residues 261-350

PDB

Domain cluster: rep: virion_morphogenesis_core_protein__YP_010085232__Western_grey_kangaroopox_virus__1566307__D280-374

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04924.18 best	Pox_A6	96.0	3.30e-27	100.0%	23.8%

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4h63H01	1.20.58.1710	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.71	40.0	4.41e-01	85.6%	69.4%
2ewfA02	1.20.1270.310	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.62	39.0	4.14e-01	90.0%	71.6%
2wgmA01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.61	41.0	4.26e-01	85.6%	75.6%
6ynwH01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.59	39.0	4.25e-01	85.6%	83.8%
2etdA00	1.20.1440.20	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain	0.56	42.0	3.70e-01	81.1%	87.2%
3fb2A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	40.0	3.81e-01	85.6%	63.8%
2yevC00	6.10.280.110	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	36.0	4.20e-01	81.1%	96.8%
3okqA00	1.20.58.1540	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain	0.54	38.0	3.44e-01	85.6%	53.6%
1cnt200	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.53	37.0	3.37e-01	73.3%	100.0%
3nf4A01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.53	35.0	3.24e-01	75.6%	51.3%
4dciA00	6.10.140.1110	Special › Helix non-globular › Helix Hairpins ›	0.53	42.0	3.52e-01	85.6%	51.0%
1jadA00	1.20.1230.10	Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain	0.52	45.0	3.30e-01	94.4%	44.6%
1x9mA01	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.52	44.0	3.36e-01	97.8%	53.5%
2q0oC00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.51	36.0	3.72e-01	85.6%	76.7%
3pltA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.51	41.0	3.16e-01	87.8%	68.7%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2485663	7021.1.1.1 ↗	alpha bundles › viral membrane assembly protein A6 homolog › viral membrane assembly protein A6 homolog › viral membrane assembly protein A6 homolog › Pox_A6	0.88	84.0	5.86e-01	100.0%	36.5%
5028088	3877.1.1.0 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC	0.68	54.0	4.61e-01	85.6%	67.4%
3642551	4336.1.1.0 ↗	alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like	0.64	50.0	4.87e-01	100.0%	78.0%
3820042	4336.2.1.0 ↗	alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1	0.61	54.0	5.04e-01	97.8%	97.3%
3697385	2004.1.1.87 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N	0.61	45.0	2.89e-01	78.9%	39.8%
3733140	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.60	35.0	2.97e-01	85.6%	32.9%
5014074	632.1.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain	0.57	43.0	4.46e-01	92.2%	84.7%
4121448	4106.1.1.1 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC	0.57	42.0	3.14e-01	81.1%	28.6%
3696717	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.56	45.0	3.52e-01	85.6%	52.1%
4309108	1008.1.1.66 ↗	alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › DGCcoil	0.55	41.0	3.66e-01	82.2%	56.0%
3839497	150.5.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like	0.53	39.0	4.09e-01	85.6%	82.4%
3784055	192.24.1.0 ↗	alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain	0.53	40.0	3.55e-01	85.6%	56.2%
3182497	2004.1.1.87 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N	0.52	44.0	2.81e-01	92.2%	24.4%
3608075	603.1.1.218 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Flagellar_rod	0.52	35.0	2.94e-01	71.1%	86.5%
3951780	4246.1.1.2 ↗	a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1	0.51	41.0	2.63e-01	85.6%	18.3%
3657554	601.33.1.16 ↗	alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › DUF4149	0.50	37.0	3.44e-01	80.0%	60.9%