hypothetical_protein_SERV_ORF108

Euk-Vir

Short-finned_eel_ranavirus

hypothetical_protein_SERV_ORF108__YP_009259374__Short-finned_eel_ranavirus__638660

Identity

66.3 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Ranavirus› Short-finned_eel_ranavirus

TaxID: 638660

View cluster (8 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 208-295

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wwxB00	1.20.1260.70	Mainly Alpha › Up-down Bundle › Ferritin ›	0.67	43.0	3.28e-01	80.7%	29.0%
1t98A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.66	45.0	4.53e-01	70.5%	87.4%
4nxiA00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.61	44.0	3.46e-01	77.3%	34.7%
3w5mA05	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.51	43.0	2.97e-01	96.6%	31.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3405891	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.63	57.0	5.59e-01	98.9%	89.5%
3270287	3877.1.1.1 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP	0.60	53.0	4.00e-01	98.9%	74.5%
2392755	191.1.1.1 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1	0.53	36.0	3.69e-01	70.5%	87.2%
3193532	622.4.1.35 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › PF26729	0.51	42.0	4.17e-01	87.5%	85.6%

D2 medium residues 1-67_83-135

PDB

Domain cluster: rep: hypothetical_protein_MIV056L__YP_654628__Invertebrate_iridescent_virus_3__345201__D94-180

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19150.6 best	DUF5832	39.6	7.60e-10	35.0%	49.4%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3b4nA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.56	35.0	3.98e-01	80.0%	85.2%
1fnfA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	33.0	3.67e-01	79.2%	84.3%
1hyoA02	3.90.850.10	Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain	0.51	38.0	2.89e-01	78.3%	89.5%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3706180	2007.2.3.2 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc	0.58	40.0	3.11e-01	70.8%	56.7%
3397457	379.1.1.0 ↗	few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors	0.55	29.0	3.83e-01	76.7%	100.0%
4225330	303.1.1.2 ↗	a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › HDC	0.52	36.0	2.94e-01	70.0%	80.3%
3729499	302.1.1.1 ↗	a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C	0.51	36.0	3.27e-01	73.3%	74.1%
3583299	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.50	35.0	3.75e-01	79.2%	83.8%