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hypothetical_protein_SERV_ORF95
Euk-VirShort-finned_eel_ranavirus
hypothetical_protein_SERV_ORF95__YP_009259387__Short-finned_eel_ranavirus__638660
Identity
- Accession:
- YP_009259387 ↗
- Protein ID:
- hypothetical_protein_SERV_ORF95
- Kingdom:
- euk
Quality
64.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Ranavirus›
Short-finned_eel_ranavirus
TaxID: 638660
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 208-279
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19204.6 best | DUF5876 | 114.2 | 8.00e-33 | 100.0% | 12.4% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.58 | 49.0 | 3.92e-01 | 91.7% | 74.6% |
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 35.0 | 3.79e-01 | 77.8% | 78.0% |
| 4cybD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 38.0 | 2.88e-01 | 100.0% | 31.6% |
| 2fjcB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 43.0 | 3.50e-01 | 100.0% | 66.7% |
| 3kwoA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 43.0 | 3.54e-01 | 100.0% | 65.1% |
| 2chpA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 42.0 | 3.47e-01 | 100.0% | 69.6% |
| 3iq1B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 41.0 | 3.37e-01 | 100.0% | 60.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039602 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.66 | 48.0 | 4.44e-01 | 76.4% | 85.6% |
| 3439292 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.63 | 55.0 | 4.11e-01 | 100.0% | 55.8% |
| 3336061 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.62 | 46.0 | 4.65e-01 | 79.2% | 90.0% |
| 5077081 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.60 | 52.0 | 3.76e-01 | 95.8% | 79.5% |
| 3706370 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.57 | 42.0 | 4.50e-01 | 81.9% | 95.0% |
| 3253427 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.54 | 40.0 | 3.78e-01 | 100.0% | 64.8% |
| 4046400 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.50 | 42.0 | 3.41e-01 | 100.0% | 67.3% |
D2
high
residues 431-558
D3
medium
residues 126-207
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19204.6 best | DUF5876 | 154.0 | 7.20e-45 | 100.0% | 14.5% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oyoA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.61 | 40.0 | 3.53e-01 | 97.6% | 44.0% |
| 3qqaA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 38.0 | 4.44e-01 | 91.5% | 93.2% |
| 1n93X01 | 1.10.3040.10 | Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 1 › borna disease virus nucleoprotein, domain 1 | 0.55 | 43.0 | 3.29e-01 | 100.0% | 34.1% |
| 6p10B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 42.0 | 4.07e-01 | 97.6% | 73.6% |
| 2ixnA02 | 1.20.120.1150 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphotyrosyl phosphate activator, C-terminal lid domain | 0.54 | 42.0 | 3.95e-01 | 87.8% | 89.7% |
| 2jaeA03 | 1.20.1440.240 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.54 | 34.0 | 3.15e-01 | 92.7% | 51.5% |
| 2ou6A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.54 | 38.0 | 3.04e-01 | 75.6% | 94.0% |
| 5jqkA03 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.53 | 41.0 | 2.87e-01 | 84.1% | 95.6% |
| 3l24B02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.52 | 39.0 | 2.87e-01 | 84.1% | 93.5% |
| 3qfeB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 38.0 | 2.60e-01 | 80.5% | 62.9% |
| 1bxiA00 | 1.10.1200.20 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Colicin E immunity protein | 0.51 | 37.0 | 3.79e-01 | 80.5% | 94.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4270602 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.56 | 45.0 | 3.01e-01 | 92.7% | 93.0% |
| 1905936 | 283.1.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24,Peptidase_M24_C | 0.56 | 44.0 | 3.05e-01 | 86.6% | 93.7% |
| 3215059 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 39.0 | 2.75e-01 | 79.3% | 80.3% |
| 3489093 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.52 | 45.0 | 3.27e-01 | 100.0% | 73.1% |
| 4175293 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 4.10e-01 | 87.8% | 96.5% |
| 4519331 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.51 | 40.0 | 2.65e-01 | 86.6% | 23.1% |