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hypothetical_protein_SWSSV_gp047
Euk-VirWhite_spot_syndrome_virus
hypothetical_protein_SWSSV_gp047__YP_009220521__White_spot_syndrome_virus__342409
Identity
- Accession:
- YP_009220521 ↗
- Protein ID:
- hypothetical_protein_SWSSV_gp047
- Kingdom:
- euk
Quality
59.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-71
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uyjA01 | 3.30.360.60 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › | 0.70 | 46.0 | 4.16e-01 | 72.1% | 50.0% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.70 | 40.0 | 4.26e-01 | 100.0% | 64.8% |
| 4c26A00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.66 | 41.0 | 3.99e-01 | 98.4% | 57.6% |
| 2j0nB00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.66 | 46.0 | 3.31e-01 | 75.4% | 64.7% |
| 3fo5B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 43.0 | 2.96e-01 | 82.0% | 84.5% |
| 1jssA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 39.0 | 2.86e-01 | 75.4% | 97.0% |
| 4rmmA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 47.0 | 3.62e-01 | 91.8% | 85.9% |
| 2e6zA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 34.0 | 3.49e-01 | 100.0% | 62.7% |
| 2cy9B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 48.0 | 3.75e-01 | 96.7% | 90.2% |
| 3lmbA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 43.0 | 3.21e-01 | 86.9% | 92.4% |
| 2qdsA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 43.0 | 3.03e-01 | 91.8% | 49.6% |
| 2r55A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 38.0 | 2.81e-01 | 80.3% | 95.7% |
| 2lmcB00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 34.0 | 3.46e-01 | 100.0% | 65.6% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.53 | 38.0 | 3.71e-01 | 96.7% | 69.7% |
| 2qwzA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 45.0 | 3.54e-01 | 96.7% | 91.0% |
| 1lc5A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 43.0 | 3.49e-01 | 93.4% | 84.0% |
| 3e1eC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 45.0 | 3.45e-01 | 96.7% | 89.4% |
| 6n90A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.52 | 43.0 | 3.87e-01 | 93.4% | 76.1% |
| 4emoC00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 44.0 | 3.65e-01 | 100.0% | 87.9% |
| 3ffhA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 41.0 | 3.30e-01 | 90.2% | 81.8% |
| 6serA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 44.0 | 3.03e-01 | 100.0% | 55.3% |
| 2a0aA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 44.0 | 3.51e-01 | 100.0% | 59.5% |
| 3hdoA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 40.0 | 3.23e-01 | 90.2% | 76.9% |
| 3p1tA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 41.0 | 3.31e-01 | 90.2% | 88.5% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5019856 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.68 | 46.0 | 4.11e-01 | 70.5% | 57.6% |
| 3938665 | 109.3.1.195 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_3, Ank_4 | 0.67 | 47.0 | 2.94e-01 | 73.8% | 48.9% |
| 3235882 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.66 | 49.0 | 2.77e-01 | 82.0% | 18.3% |
| 3381974 | 2003.1.2.47 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NDH2_C | 0.65 | 42.0 | 2.81e-01 | 70.5% | 17.8% |
| 3841414 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.64 | 38.0 | 3.70e-01 | 86.9% | 51.4% |
| 3924529 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.64 | 43.0 | 2.68e-01 | 70.5% | 43.9% |
| 4435060 | 316.1.1.6 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 | 0.64 | 46.0 | 3.07e-01 | 77.0% | 71.4% |
| 3173654 | 220.1.1.191 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28624 | 0.61 | 54.0 | 3.87e-01 | 96.7% | 81.2% |
| 3511696 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.60 | 43.0 | 4.13e-01 | 100.0% | 65.7% |
| 4438210 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 41.0 | 3.41e-01 | 73.8% | 86.4% |
| 3722671 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.59 | 38.0 | 3.40e-01 | 72.1% | 44.4% |
| 5065528 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.58 | 40.0 | 3.89e-01 | 98.4% | 62.9% |
| 3243115 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.58 | 40.0 | 2.80e-01 | 73.8% | 86.2% |
| 3926107 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.58 | 42.0 | 3.86e-01 | 100.0% | 58.7% |
| 4504559 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.57 | 39.0 | 4.13e-01 | 100.0% | 80.0% |
| 5027448 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.57 | 44.0 | 3.38e-01 | 86.9% | 93.5% |
| 5060093 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.57 | 39.0 | 3.66e-01 | 98.4% | 59.5% |
| 3938096 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.56 | 40.0 | 2.97e-01 | 73.8% | 79.4% |
| 4182428 | 220.1.1.191 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28624 | 0.55 | 48.0 | 3.52e-01 | 93.4% | 88.0% |
| 4036894 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.55 | 50.0 | 3.48e-01 | 100.0% | 51.6% |
| 3979564 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.55 | 36.0 | 3.59e-01 | 100.0% | 63.1% |
| 4966955 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.55 | 38.0 | 3.70e-01 | 98.4% | 64.3% |
| 4188472 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.55 | 38.0 | 3.21e-01 | 72.1% | 83.6% |
| None | — | 0.54 | 40.0 | 2.42e-01 | 85.2% | 24.3% | |
| 3966247 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.54 | 36.0 | 3.59e-01 | 100.0% | 64.6% |
| 5041805 | 2484.7.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Uncharacterized protein PF2046 › Uncharacterized protein PF2046 › DUF4152 | 0.54 | 45.0 | 3.31e-01 | 100.0% | 69.2% |
| 4006488 | 4959.1.1.0 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit | 0.54 | 36.0 | 3.56e-01 | 98.4% | 64.6% |
| 3385015 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.54 | 46.0 | 3.60e-01 | 98.4% | 71.4% |
| 3578918 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.54 | 46.0 | 3.66e-01 | 100.0% | 76.3% |
| 4303134 | 220.1.1.191 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28624 | 0.54 | 47.0 | 3.51e-01 | 98.4% | 87.7% |
| 3982411 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.53 | 36.0 | 3.52e-01 | 98.4% | 64.6% |
| 3412971 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.53 | 39.0 | 3.18e-01 | 77.0% | 69.1% |
| 5830 | 330.7.1.1 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › DUF905 | 0.53 | 38.0 | 3.71e-01 | 96.7% | 69.7% |
| 3942181 | 6150.1.1.0 ↗ | a+b two layers › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 | 0.52 | 44.0 | 3.78e-01 | 98.4% | 80.0% |
| 3681890 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.52 | 43.0 | 3.05e-01 | 93.4% | 81.5% |
| 4146208 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.51 | 41.0 | 3.23e-01 | 90.2% | 84.9% |
| 2650973 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.51 | 44.0 | 2.98e-01 | 100.0% | 51.8% |
| 3601211 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.51 | 45.0 | 3.01e-01 | 100.0% | 49.6% |
| 145216 | 4086.1.1.1 ↗ | a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI | 0.51 | 35.0 | 2.99e-01 | 73.8% | 100.0% |
| 4947442 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.50 | 45.0 | 3.45e-01 | 100.0% | 77.1% |
| 3633647 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.50 | 38.0 | 3.72e-01 | 100.0% | 75.4% |