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hypothetical_protein_SlsnVgp040

Euk-Vir

Spodoptera_littoralis_nucleopolyhedrovirus

hypothetical_protein_SlsnVgp040__YP_009505849__Spodoptera_littoralis_nucleopolyhedrovirus__10456

Identity

Accession:: YP_009505849 ↗
Protein ID:: hypothetical_protein_SlsnVgp040
Kingdom:: euk

Quality

71.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_littoralis_nucleopolyhedrovirus

TaxID: 10456

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-93

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF11077.15 best	DUF2616	45.3	1.20e-11	100.0%	44.4%

CATH (26)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1e3pA02	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.69	45.0	4.76e-01	94.6%	74.7%
1yxrA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.61	40.0	4.46e-01	84.9%	83.8%
3qqaA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.61	46.0	4.06e-01	81.7%	74.5%
2v6yA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.61	41.0	4.50e-01	87.1%	85.3%
6humG01	1.20.120.1200	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	0.59	37.0	3.07e-01	76.3%	36.9%
8jpdG01	1.10.167.10	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2	0.55	43.0	3.72e-01	95.7%	53.1%
4wzxA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.55	37.0	4.03e-01	86.0%	84.0%
8anqA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.55	50.0	3.70e-01	97.8%	61.2%
4adnA01	1.20.1280.250	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.55	44.0	4.58e-01	100.0%	94.1%
7eu3E01	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.55	38.0	4.00e-01	76.3%	77.0%
2nwbA02	1.20.58.480	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	44.0	3.33e-01	89.2%	86.9%
1fioA00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	47.0	3.75e-01	96.8%	82.6%
3a7kB00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.54	48.0	3.47e-01	97.8%	50.0%
1xioA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.53	46.0	3.57e-01	96.8%	87.6%
1m56C02	1.20.120.80	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle	0.53	47.0	3.72e-01	98.9%	70.9%
3a8pA02	6.10.140.680	Special › Helix non-globular › Helix Hairpins ›	0.52	41.0	3.81e-01	81.7%	66.7%
1u89A00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.52	43.0	3.74e-01	89.2%	67.6%
4r42A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.52	41.0	3.18e-01	82.8%	76.5%
1xdxA01	3.30.1140.40	Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1	0.52	46.0	4.48e-01	96.8%	95.0%
5cy5B00	1.20.1200.10	Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like	0.51	43.0	3.79e-01	96.8%	83.2%
2wzkA01	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.51	39.0	3.58e-01	92.5%	60.6%
4fb2A00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.51	46.0	3.03e-01	100.0%	62.2%
6srbA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.51	44.0	4.22e-01	96.8%	86.2%
3iayA07	1.10.132.60	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain	0.50	39.0	3.37e-01	82.8%	94.1%
3kyiA00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.50	43.0	3.93e-01	95.7%	80.5%
2rkhA02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.50	37.0	4.07e-01	82.8%	94.7%

ECOD (31)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4677545	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.70	45.0	5.36e-01	92.5%	100.0%
4617287	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.70	47.0	4.83e-01	94.6%	72.2%
4520363	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.68	46.0	4.69e-01	93.5%	71.1%
3957449	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.68	45.0	4.45e-01	94.6%	64.0%
4629067	633.24.1.5 ↗	alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › PF29080	0.67	52.0	5.42e-01	92.5%	88.2%
5038239	3843.1.1.31 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q3	0.66	41.0	4.55e-01	83.9%	77.3%
3000229	3579.1.1.1 ↗	extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Oxidored_q3	0.66	39.0	4.34e-01	79.6%	73.3%
3264401	6132.1.1.0 ↗	alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain	0.64	42.0	4.69e-01	93.5%	82.7%
4304916	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.64	47.0	4.58e-01	93.5%	70.0%
3834638	3579.1.1.1 ↗	extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Oxidored_q3	0.64	38.0	2.96e-01	75.3%	29.5%
4431719	5039.1.1.1 ↗	alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › COX3	0.64	51.0	3.53e-01	84.9%	77.3%
4143595	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.64	43.0	4.31e-01	93.5%	67.4%
4672230	3579.1.1.0 ↗	extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J	0.63	39.0	3.27e-01	77.4%	39.3%
3498399	109.4.1.213 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FancD2	0.62	47.0	2.59e-01	80.6%	9.8%
4594465	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.60	45.0	4.55e-01	94.6%	77.9%
4181805	604.9.1.1 ↗	alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p	0.60	38.0	4.13e-01	88.2%	76.9%
3263521	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.59	41.0	4.28e-01	90.3%	77.6%
4991647	3281.1.1.1 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M	0.58	52.0	3.16e-01	97.8%	46.1%
2814929	150.1.1.14 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like	0.58	38.0	4.41e-01	81.7%	92.6%
3572303	601.1.2.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608)	0.56	48.0	4.32e-01	93.5%	78.5%
3260290	603.1.1.97 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE	0.56	49.0	3.73e-01	95.7%	81.9%
4979111	604.6.1.0 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain	0.56	42.0	4.13e-01	79.6%	91.0%
3816081	109.4.1.1524 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_ZFYVE26	0.55	44.0	3.18e-01	83.9%	51.8%
2142296	150.1.1.3 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin	0.55	43.0	4.24e-01	81.7%	79.6%
4053708	150.1.2.5 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › TENA_THI-4	0.54	42.0	3.14e-01	84.9%	95.1%
4025637	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.53	49.0	4.14e-01	100.0%	84.0%
5070905	109.3.1.476 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Proton_antipo_M	0.53	48.0	3.44e-01	98.9%	40.7%
4373135	5001.1.1.6 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin	0.52	46.0	3.54e-01	95.7%	59.0%
3208233	109.4.1.18 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA	0.52	36.0	3.03e-01	95.7%	39.4%
3304304	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.52	42.0	4.10e-01	89.2%	86.7%
3272659	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	46.0	3.08e-01	100.0%	72.0%

D2 medium residues 94-212

PDB

Domain cluster: rep: hypothetical_protein_AHEV_050__YP_008003873__Adoxophyes_honmai_entomopoxvirus_L__1293540__D1-84

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF11077.15 best	DUF2616	89.3	3.80e-25	89.1%	52.2%