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hypothetical_protein_SlsnVgp043

Euk-Vir

Spodoptera_littoralis_nucleopolyhedrovirus

hypothetical_protein_SlsnVgp043__YP_009505852__Spodoptera_littoralis_nucleopolyhedrovirus__10456

Identity

Accession:
YP_009505852 ↗
Protein ID:
hypothetical_protein_SlsnVgp043
Kingdom:
euk

Quality

72.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_littoralis_nucleopolyhedrovirus

TaxID: 10456

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-74
PDB
Domain cluster: rep: hypothetical_protein_PsunGV_gp175__YP_003422514__Pseudalatia_unipuncta_granulovirus__36355__D13-66
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.73 45.0 4.75e-01 70.0% 70.4%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 43.0 4.61e-01 70.0% 71.2%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 45.0 4.27e-01 78.3% 56.3%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 42.0 4.47e-01 70.0% 71.7%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.39e-01 71.7% 68.4%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 45.0 2.86e-01 71.7% 30.4%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 47.0 4.61e-01 75.0% 96.9%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 47.0 4.61e-01 75.0% 96.8%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 43.0 3.96e-01 78.3% 51.9%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 47.0 4.66e-01 78.3% 100.0%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 46.0 2.91e-01 76.7% 36.9%
1wfqA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 46.0 4.32e-01 76.7% 97.3%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.66e-01 71.7% 84.3%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 45.0 4.38e-01 73.3% 98.5%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.63 44.0 2.73e-01 71.7% 39.9%
5xu6C01 3.30.200.110 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe 0.63 43.0 3.55e-01 71.7% 77.8%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 48.0 2.97e-01 83.3% 94.9%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.05e-01 76.7% 78.2%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 43.0 4.37e-01 76.7% 89.8%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 42.0 4.09e-01 78.3% 83.6%
6l6jA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 48.0 3.74e-01 93.3% 81.6%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 40.0 3.57e-01 71.7% 71.8%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.02e-01 80.0% 97.3%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.05e-01 76.7% 73.0%
3k30A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 46.0 3.61e-01 90.0% 80.5%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 3.92e-01 81.7% 85.0%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 34.0 3.30e-01 76.7% 50.7%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 3.70e-01 81.7% 51.0%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.57 38.0 3.12e-01 70.0% 89.3%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.57 38.0 3.58e-01 70.0% 88.3%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 44.0 4.06e-01 86.7% 70.4%
4b9dB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 43.0 3.81e-01 85.0% 86.0%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 39.0 2.49e-01 73.3% 29.4%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 41.0 4.05e-01 78.3% 87.5%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 3.57e-01 83.3% 49.0%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 39.0 4.02e-01 75.0% 91.2%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.55 44.0 2.79e-01 91.7% 65.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.47e-01 91.7% 93.8%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.55 39.0 4.00e-01 76.7% 76.7%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 37.0 3.60e-01 70.0% 92.4%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 36.0 2.38e-01 70.0% 30.7%
2ytyA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 42.0 3.81e-01 90.0% 95.5%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 39.0 2.59e-01 80.0% 67.5%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.53 38.0 3.26e-01 78.3% 51.9%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 36.0 3.01e-01 73.3% 85.0%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 39.0 3.74e-01 83.3% 81.9%
3h1tA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.52 39.0 3.01e-01 81.7% 75.2%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.39e-01 80.0% 76.6%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.51 37.0 3.25e-01 81.7% 91.1%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 35.0 2.86e-01 73.3% 80.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3328618 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.73 45.0 5.34e-01 71.7% 95.0%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 49.0 4.97e-01 71.7% 75.0%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 44.0 4.62e-01 73.3% 70.9%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.70 44.0 4.48e-01 76.7% 65.0%
4026957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 44.0 4.44e-01 78.3% 63.3%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 4.90e-01 71.7% 81.8%
5079023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 46.0 5.10e-01 71.7% 93.3%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 43.0 4.56e-01 70.0% 72.2%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 45.0 4.62e-01 78.3% 72.4%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.40e-01 71.7% 67.1%
4168836 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 49.0 4.69e-01 78.3% 97.1%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.78e-01 71.7% 83.6%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.77e-01 71.7% 78.2%
4816818 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 43.0 4.67e-01 78.3% 85.1%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 46.0 4.23e-01 75.0% 80.0%
3517728 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.65 43.0 4.11e-01 78.3% 57.1%
3581611 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 43.0 4.67e-01 78.3% 80.0%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 45.0 4.38e-01 71.7% 70.8%
4947996 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 43.0 4.52e-01 70.0% 100.0%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.70e-01 73.3% 80.0%
5002450 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 43.0 4.47e-01 73.3% 76.4%
4928595 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.64 47.0 3.94e-01 80.0% 66.7%
338 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.64 45.0 4.38e-01 73.3% 98.5%
4670334 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.63 46.0 4.47e-01 75.0% 100.0%
None — 0.63 48.0 2.69e-01 83.3% 7.6%
3317544 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.63 46.0 4.50e-01 75.0% 98.5%
4059146 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.63 47.0 4.56e-01 78.3% 100.0%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.63 43.0 3.18e-01 76.7% 26.1%
4935682 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 42.0 4.35e-01 75.0% 74.5%
3243842 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 43.0 3.55e-01 71.7% 86.4%
5011618 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 3.78e-01 88.3% 37.1%
5017215 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 43.0 4.50e-01 71.7% 100.0%
3227946 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.63 45.0 4.38e-01 75.0% 96.9%
None — 0.63 47.0 2.62e-01 83.3% 7.0%
4932460 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.63 44.0 4.33e-01 73.3% 98.4%
4031670 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.62 43.0 4.39e-01 73.3% 93.3%
4475796 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 42.0 4.34e-01 70.0% 78.2%
3671986 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.61 43.0 4.15e-01 76.7% 64.3%
4062751 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.61 41.0 4.19e-01 70.0% 73.3%
4978946 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 46.0 4.63e-01 80.0% 100.0%
4043601 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.61 44.0 4.32e-01 75.0% 96.9%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.61 49.0 4.00e-01 90.0% 84.3%
3913334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.71e-01 90.0% 100.0%
4987320 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 44.0 4.48e-01 78.3% 98.3%
3381974 2003.1.2.47 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NDH2_C 0.60 48.0 3.24e-01 86.7% 77.3%
4147056 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 45.0 3.86e-01 83.3% 70.0%
3535278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.21e-01 80.0% 75.0%
4062573 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.58 40.0 3.39e-01 71.7% 64.0%
3791430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.23e-01 76.7% 94.5%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 3.86e-01 81.7% 64.7%
4886650 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.57 40.0 3.58e-01 73.3% 71.8%
4985994 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.57 46.0 2.87e-01 91.7% 63.7%
5072324 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.57 45.0 3.89e-01 88.3% 85.3%
3479037 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 42.0 3.86e-01 83.3% 72.5%
3469800 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 41.0 3.82e-01 83.3% 72.5%
4958343 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.54 42.0 3.77e-01 88.3% 95.6%
3611012 7577.1.1.1 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.54 43.0 2.58e-01 86.7% 85.7%
3373479 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 38.0 2.51e-01 75.0% 43.6%
3592754 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 41.0 3.36e-01 83.3% 86.6%
4494810 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.52 36.0 3.35e-01 73.3% 67.5%
3618504 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.51 37.0 3.79e-01 78.3% 96.7%
3749194 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 37.0 3.68e-01 80.0% 82.8%
4865244 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.49e-01 75.0% 87.3%