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hypothetical_protein_TW95_gp0038

Euk-Vir

Pandoravirus_inopinatum

hypothetical_protein_TW95_gp0038__YP_009119007__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119007 ↗
Protein ID:
hypothetical_protein_TW95_gp0038
Kingdom:
euk

Quality

55.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_inopinatum

TaxID: 1605721

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-82
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1khdA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.73 49.0 4.00e-01 70.4% 92.0%
2gwlA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.72 61.0 4.15e-01 98.1% 29.5%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.70 51.0 4.63e-01 90.7% 58.1%
2chnB03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.69 57.0 3.97e-01 94.4% 70.0%
5mi7A03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.68 56.0 3.65e-01 94.4% 47.7%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.65 51.0 3.42e-01 90.7% 22.1%
6vg5A00 1.10.10.930 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 45.0 4.04e-01 100.0% 50.6%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.64 48.0 4.25e-01 100.0% 54.1%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.63 51.0 3.88e-01 88.9% 86.6%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.63 52.0 3.98e-01 100.0% 39.0%
4ga6A02 1.20.970.50 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › 0.63 48.0 3.48e-01 83.3% 51.3%
3nrkA01 1.10.4030.10 Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain 0.62 45.0 3.10e-01 79.6% 21.8%
3s4lA00 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.62 46.0 3.21e-01 83.3% 50.3%
3dfgA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.38e-01 79.6% 79.2%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 39.0 3.84e-01 94.4% 58.1%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 4.08e-01 85.2% 69.6%
2xqyA02 1.20.58.1340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 44.0 3.37e-01 83.3% 62.9%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.59 44.0 3.51e-01 79.6% 90.8%
4ofzA01 1.20.58.1800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 43.0 3.52e-01 81.5% 60.2%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 45.0 3.96e-01 85.2% 79.8%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.59 39.0 3.77e-01 98.1% 59.4%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 40.0 3.75e-01 75.9% 77.0%
2ekfA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.58 38.0 4.03e-01 98.1% 78.3%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.58 44.0 3.80e-01 83.3% 73.9%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.57 44.0 3.64e-01 100.0% 44.9%
1n00A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.57 40.0 3.68e-01 100.0% 56.2%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 3.27e-01 72.2% 77.1%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.74e-01 100.0% 70.8%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.55 46.0 3.88e-01 100.0% 76.0%
1fkaD01 1.10.1050.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › Ribosomal protein S4/S9, N-terminal domain 0.54 36.0 3.41e-01 77.8% 55.2%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.54 39.0 3.75e-01 100.0% 65.6%
1wlmA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 41.0 3.42e-01 85.2% 96.1%
3g36B00 1.20.890.10 Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain 0.54 35.0 3.62e-01 98.1% 72.5%
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.54 45.0 4.23e-01 100.0% 82.6%
1vq8I00 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.53 46.0 4.26e-01 100.0% 85.7%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 36.0 2.81e-01 75.9% 52.9%
2zueA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.52 45.0 3.56e-01 100.0% 100.0%
7ep3A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 41.0 2.79e-01 90.7% 35.6%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 37.0 3.03e-01 81.5% 58.3%
3h37A02 1.10.110.30 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › 0.51 43.0 3.78e-01 98.1% 88.4%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 40.0 2.84e-01 85.2% 67.1%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 41.0 3.21e-01 92.6% 85.4%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.50 38.0 3.60e-01 100.0% 67.1%
7bi4A01 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.50 34.0 2.55e-01 81.5% 22.0%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.50 40.0 2.77e-01 94.4% 74.5%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4196863 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.70 51.0 4.73e-01 88.9% 60.0%
4945246 184.1.1.6 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_transf_3 0.70 51.0 4.69e-01 88.9% 60.0%
4387655 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.70 52.0 4.78e-01 90.7% 61.4%
54358 4266.1.1.0 ↗ alpha bundles › Hyaluronidase domain-like › Hyaluronidase post-catalytic domain-like › Hyaluronidase post-catalytic domain-like 0.69 57.0 4.16e-01 94.4% 81.8%
3838782 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.68 46.0 4.39e-01 83.3% 60.0%
4050209 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.66 48.0 4.40e-01 90.7% 60.0%
1504901 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.65 47.0 4.30e-01 90.7% 59.2%
4008220 109.4.1.2079 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27158, PF30223 0.64 51.0 3.04e-01 88.9% 12.1%
3350583 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.63 45.0 3.05e-01 79.6% 35.1%
4148498 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.63 44.0 4.54e-01 79.6% 78.0%
4355361 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.63 45.0 4.15e-01 88.9% 58.6%
3981499 109.4.1.1928 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30223 0.63 49.0 3.95e-01 90.7% 43.8%
277273 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.63 43.0 4.01e-01 88.9% 56.3%
3669249 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 49.0 3.13e-01 87.0% 33.8%
3600491 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 43.0 3.02e-01 75.9% 45.8%
5040578 604.9.1.0 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.61 47.0 4.43e-01 83.3% 78.5%
4127991 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.61 42.0 4.02e-01 87.0% 61.5%
4489091 109.4.1.1253 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Atp25_C 0.60 45.0 3.10e-01 81.5% 54.5%
3942571 101.1.1.198 ↗ alpha arrays › HTH › HTH › Three-helical HTH › KorB 0.60 46.0 4.37e-01 90.7% 69.2%
3236724 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 3.65e-01 83.3% 72.4%
3688841 103.1.1.14 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.59 46.0 4.61e-01 100.0% 85.5%
3218544 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 39.0 3.46e-01 70.4% 90.0%
4967653 103.11.1.3 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › PadR 0.57 45.0 4.38e-01 87.0% 90.0%
3246265 6171.1.1.2 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › KDM6_C-hel 0.57 48.0 3.41e-01 98.1% 87.4%
4933924 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 4.06e-01 94.4% 71.7%
4009408 639.2.1.1 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.55 40.0 3.79e-01 79.6% 64.7%
3213274 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.55 40.0 3.83e-01 81.5% 66.2%
3277489 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.54 39.0 3.40e-01 83.3% 75.8%
3990846 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 43.0 3.81e-01 100.0% 76.7%
4165801 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 39.0 3.48e-01 83.3% 84.7%
4954820 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.53 44.0 3.17e-01 96.3% 57.7%
4390762 628.1.1.1 ↗ alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.52 43.0 3.51e-01 100.0% 66.7%
4980864 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.52 38.0 3.01e-01 81.5% 63.4%
4622610 101.1.1.431 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CFEM 0.51 43.0 4.01e-01 100.0% 75.7%
D2 high residues 151-220
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_895__YP_009481579__Pandoravirus_macleodensis__2107707__D153-225