←Back to structures

hypothetical_protein_TW95_gp0138

Euk-Vir

Pandoravirus_inopinatum

hypothetical_protein_TW95_gp0138__YP_009119107__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119107 ↗
Protein ID:
hypothetical_protein_TW95_gp0138
Kingdom:
euk

Quality

75.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_inopinatum

TaxID: 1605721

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-211
PDB
Domain cluster: rep: Salt_Pond_R1_B_H2O_MG_scaffold_1_prodigal-single.1__X__X__00295__D161-347
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09414.16 best RNA_ligase 39.2 1.20e-09 95.6% 91.2%
D2 high residues 228-311
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 47.0 5.50e-01 76.2% 100.0%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 46.0 5.28e-01 72.6% 91.9%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 43.0 4.90e-01 77.4% 90.0%
3bz6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.73e-01 83.3% 68.9%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.66 52.0 4.48e-01 85.7% 95.6%
4f0uA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.66 50.0 4.05e-01 81.0% 80.0%
3gi8C00 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.66 52.0 3.31e-01 85.7% 57.9%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.66 52.0 4.38e-01 86.9% 94.5%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 44.0 4.99e-01 77.4% 100.0%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 50.0 4.30e-01 85.7% 95.7%
1oshA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.63 45.0 3.37e-01 75.0% 85.6%
5g5gA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.63 49.0 4.79e-01 85.7% 77.8%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.62 41.0 3.48e-01 76.2% 39.6%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 51.0 4.34e-01 90.5% 95.7%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 48.0 5.14e-01 86.9% 100.0%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 51.0 4.28e-01 91.7% 97.3%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.62 47.0 3.96e-01 84.5% 48.2%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 48.0 4.01e-01 85.7% 94.8%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.62 42.0 4.76e-01 79.8% 96.8%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.61 42.0 4.65e-01 89.3% 100.0%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 48.0 4.01e-01 86.9% 96.6%
2vqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.60 41.0 3.36e-01 77.4% 35.9%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.60 43.0 3.66e-01 85.7% 45.7%
1kn1B00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.60 43.0 3.56e-01 77.4% 79.5%
2yxlA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.59 43.0 3.64e-01 78.6% 75.7%
3ubcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 47.0 4.17e-01 90.5% 98.5%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.71e-01 83.3% 100.0%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.59 45.0 4.56e-01 83.3% 100.0%
2imsA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.58 47.0 3.81e-01 94.0% 45.4%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 42.0 3.71e-01 79.8% 53.0%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 42.0 4.39e-01 79.8% 91.0%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.57 41.0 3.52e-01 77.4% 52.5%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 48.0 4.01e-01 95.2% 92.7%
1ulyA02 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.56 40.0 3.78e-01 73.8% 69.3%
6tqpA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.55 43.0 3.78e-01 91.7% 53.7%
5ojcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 45.0 3.72e-01 91.7% 92.2%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 37.0 3.28e-01 84.5% 44.5%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 41.0 4.20e-01 83.3% 87.7%
6qm7M00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 43.0 3.22e-01 86.9% 93.5%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 42.0 3.72e-01 85.7% 93.7%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.54 32.0 3.34e-01 75.0% 64.5%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 40.0 4.09e-01 90.5% 84.5%
3sjqC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 31.0 3.19e-01 79.8% 58.7%
3a11B01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.53 42.0 3.74e-01 89.3% 63.2%
6dftJ00 3.40.910.10 Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase 0.53 46.0 3.16e-01 98.8% 46.8%
7shlA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 42.0 3.79e-01 89.3% 63.9%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 36.0 3.24e-01 72.6% 50.8%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.52 39.0 3.47e-01 83.3% 98.5%
4uqwB00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.51 36.0 2.94e-01 71.4% 39.5%
3b5iA02 1.10.1200.220 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.51 40.0 3.87e-01 94.0% 75.8%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.51 43.0 3.42e-01 97.6% 75.5%
2pihA00 1.20.1500.10 Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like 0.51 35.0 3.18e-01 73.8% 56.1%
1n4kA02 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.50 37.0 3.14e-01 90.5% 45.3%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045956 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 5.32e-01 86.9% 86.3%
3611713 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.67 48.0 5.28e-01 91.7% 98.5%
3640310 5076.2.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › EI24 0.66 45.0 3.24e-01 70.2% 77.0%
3670205 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.65 48.0 4.21e-01 86.9% 52.4%
4009124 639.2.1.5 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 0.65 43.0 4.97e-01 76.2% 96.7%
3848681 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.64 46.0 5.03e-01 79.8% 98.5%
4871777 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.64 51.0 4.23e-01 86.9% 96.0%
4196397 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.63 51.0 4.34e-01 89.3% 96.4%
1322519 101.1.2.188 ↗ alpha arrays › HTH › HTH › winged helix domain › Roquin_1_2-like_ROQ 0.63 45.0 4.40e-01 83.3% 67.4%
3625495 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.63 52.0 4.24e-01 91.7% 87.5%
3386017 3758.2.1.1 ↗ alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.63 51.0 3.82e-01 89.3% 80.8%
4434935 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.61 47.0 4.02e-01 83.3% 85.0%
3494078 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 4.59e-01 81.0% 92.3%
3247756 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.61 52.0 4.14e-01 95.2% 94.3%
50002 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.61 48.0 4.03e-01 86.9% 95.4%
5059271 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.61 34.0 3.34e-01 76.2% 48.9%
3669523 101.1.1.66 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 0.61 42.0 4.57e-01 79.8% 93.8%
3345767 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.61 42.0 3.73e-01 72.6% 50.4%
4015114 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.60 49.0 4.66e-01 94.0% 76.0%
3646698 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.60 45.0 4.55e-01 86.9% 80.0%
3629401 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.60 45.0 4.80e-01 84.5% 97.1%
5070003 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 29.0 3.36e-01 70.2% 65.0%
5022220 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.59 43.0 3.71e-01 77.4% 84.4%
1935871 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.58 41.0 3.18e-01 72.6% 54.1%
3701680 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.58 48.0 4.60e-01 91.7% 82.8%
4934424 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.58 45.0 2.97e-01 84.5% 26.6%
4941193 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 33.0 3.33e-01 76.2% 55.3%
3416178 109.16.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › TROVE domain-like › TROVE domain-like 0.56 37.0 2.44e-01 86.9% 15.6%
1148717 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.56 30.0 3.17e-01 83.3% 56.0%
169082 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.56 42.0 3.15e-01 82.1% 78.2%
3686422 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.56 46.0 4.38e-01 96.4% 100.0%
3960471 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.56 40.0 4.18e-01 83.3% 89.0%
4994779 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.55 42.0 4.24e-01 83.3% 94.1%
3215219 371.1.1.0 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.55 43.0 4.00e-01 86.9% 74.1%
380191 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.54 45.0 3.73e-01 91.7% 92.2%
3377792 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 44.0 4.55e-01 100.0% 96.2%
3789554 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.53 42.0 4.17e-01 85.7% 84.4%
3898757 109.4.1.3331 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BROMI_N 0.53 44.0 3.73e-01 96.4% 89.7%
3695657 109.4.1.17 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.52 37.0 3.33e-01 86.9% 52.0%
3882493 633.23.1.34 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.51 39.0 3.28e-01 83.3% 94.2%