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hypothetical_protein_TW95_gp0214

Euk-Vir

Pandoravirus_inopinatum

hypothetical_protein_TW95_gp0214__YP_009119183__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119183 ↗
Protein ID:
hypothetical_protein_TW95_gp0214
Kingdom:
euk

Quality

77.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_inopinatum

TaxID: 1605721

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-71_85-97
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_305__YP_009480989__Pandoravirus_macleodensis__2107707__D5-73
D2 medium residues 72-84_109-206
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 62.0 4.94e-01 100.0% 74.7%
5cmyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 56.0 5.20e-01 88.3% 88.7%
4ffbC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 60.0 4.73e-01 100.0% 64.5%
4xvxA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.66 46.0 4.65e-01 71.2% 82.9%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 57.0 5.40e-01 98.2% 92.7%
4flbA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 56.0 5.35e-01 100.0% 81.7%
5m9dA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 57.0 5.34e-01 100.0% 80.4%
3gs3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 56.0 4.39e-01 100.0% 67.9%
1sz9C00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 55.0 5.15e-01 100.0% 77.1%
5cwkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 55.0 4.89e-01 100.0% 88.7%
2yinA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.61 46.0 4.38e-01 78.4% 90.6%
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.59 51.0 3.94e-01 99.1% 73.1%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.59 45.0 4.28e-01 80.2% 92.2%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 41.0 3.81e-01 72.1% 71.7%
5gj7A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.59 45.0 4.40e-01 82.0% 78.4%
2or0B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.58 49.0 4.77e-01 91.9% 85.5%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 40.0 3.70e-01 72.1% 66.7%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 41.0 3.79e-01 73.9% 89.0%
3eslA02 1.25.40.930 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 44.0 4.36e-01 98.2% 80.7%
5yjlB01 3.30.460.30 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain 0.55 46.0 4.13e-01 93.7% 93.2%
3tdoA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.55 45.0 3.44e-01 89.2% 91.8%
3b81A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 42.0 3.60e-01 83.8% 79.8%
3mnlB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 42.0 3.69e-01 88.3% 78.0%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.52 39.0 3.95e-01 77.5% 82.7%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.52 38.0 3.79e-01 91.0% 72.0%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.51 36.0 3.94e-01 73.0% 92.1%
3sz7A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 42.0 3.89e-01 92.8% 76.2%
4k51B00 1.25.40.860 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 41.0 3.73e-01 90.1% 67.9%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.51 42.0 3.88e-01 90.1% 78.7%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3650341 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 64.0 4.90e-01 100.0% 60.8%
3414171 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.70 57.0 4.88e-01 88.3% 63.3%
3627872 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 62.0 4.72e-01 100.0% 79.2%
3467405 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 56.0 5.23e-01 88.3% 92.1%
3293626 109.4.1.44 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 0.66 59.0 3.56e-01 100.0% 22.1%
3733091 109.58.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C 0.66 52.0 5.25e-01 84.7% 96.4%
3286501 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 50.0 4.58e-01 80.2% 73.8%
3370248 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.66 59.0 3.98e-01 100.0% 35.5%
3384514 604.15.1.0 ↗ alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.65 41.0 4.70e-01 70.3% 92.0%
3274306 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 43.0 4.39e-01 72.1% 70.0%
3720756 109.4.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.64 56.0 3.99e-01 100.0% 44.4%
3662081 109.4.1.94 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANTH 0.63 57.0 4.89e-01 99.1% 76.0%
2145820 109.4.1.3586 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, TPR_IMB1, TPR_IPO5 0.63 57.0 3.61e-01 100.0% 36.6%
3797332 109.4.1.1449 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27576 0.62 53.0 4.58e-01 94.6% 66.3%
3616543 109.3.1.229 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF27576 0.61 53.0 4.65e-01 94.6% 70.3%
3436107 109.4.1.228 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo84_C 0.60 51.0 4.10e-01 94.6% 82.2%
3399321 109.4.1.1328 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26034 0.60 51.0 5.28e-01 94.6% 99.0%
3620341 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 46.0 4.78e-01 99.1% 87.6%
4003371 109.4.1.112 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1 0.59 52.0 4.30e-01 100.0% 83.4%
3496682 109.4.1.146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_load 0.58 50.0 3.59e-01 94.6% 31.8%
None — 0.57 52.0 4.48e-01 100.0% 68.2%
3628771 109.4.1.1923 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C, HAT_PRP39_C 0.56 50.0 4.25e-01 100.0% 58.4%
3885817 109.4.1.777 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 50.0 3.99e-01 100.0% 60.9%
5014600 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 4.36e-01 99.1% 96.8%
3763961 109.4.1.1385 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IF140_C, TPR_IF140-IFT172 0.51 44.0 4.30e-01 95.5% 95.8%
D3 medium residues 207-279
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.72 56.0 4.75e-01 84.9% 67.5%
2vsoF01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 54.0 3.85e-01 100.0% 43.3%
3qnfA04 1.10.3480.20 Mainly Alpha › Orthogonal Bundle › TorD-like › 0.62 52.0 4.03e-01 98.6% 98.9%
4ks9A01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.60 47.0 4.06e-01 89.0% 81.7%
1n1cA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.60 44.0 4.23e-01 76.7% 85.4%
3b34A05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.60 51.0 3.42e-01 100.0% 36.9%
1qgrA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 50.0 2.87e-01 100.0% 12.5%
3zheB02 1.20.190.60 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 0.59 51.0 3.88e-01 100.0% 55.2%
6srbA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 49.0 4.42e-01 98.6% 83.5%
4evfA04 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.58 49.0 5.00e-01 97.3% 100.0%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.58 50.0 3.91e-01 98.6% 81.6%
1epuA03 1.25.40.60 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 48.0 4.18e-01 100.0% 62.9%
1hy5B00 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.56 39.0 3.31e-01 72.6% 93.4%
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 39.0 3.50e-01 75.3% 74.8%
1a31A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.55 46.0 4.50e-01 98.6% 92.5%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.54 44.0 2.74e-01 91.8% 31.7%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 43.0 3.52e-01 87.7% 80.0%
4eadA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 45.0 4.08e-01 100.0% 86.9%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.54 39.0 3.23e-01 76.7% 63.7%
2v9vA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.89e-01 76.7% 92.8%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.52 42.0 4.00e-01 91.8% 94.4%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 40.0 3.28e-01 83.6% 92.0%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.51 42.0 2.69e-01 100.0% 21.6%
2yg5A03 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.51 35.0 3.36e-01 74.0% 76.3%
6x6nA01 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.50 37.0 3.20e-01 78.1% 94.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3546773 109.4.1.12 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Clathrin 0.71 60.0 4.69e-01 100.0% 43.9%
3616859 532.2.1.0 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.71 55.0 5.50e-01 84.9% 93.3%
3819985 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.70 59.0 4.67e-01 94.5% 48.4%
3172829 109.4.1.12 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Clathrin 0.69 60.0 4.07e-01 100.0% 34.3%
3786155 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.68 60.0 4.29e-01 100.0% 35.0%
3362871 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.62 53.0 3.91e-01 98.6% 34.6%
3639163 109.4.1.471 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC 0.60 47.0 3.78e-01 89.0% 56.9%
3940285 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.60 46.0 3.41e-01 84.9% 55.6%
4432241 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 50.0 3.89e-01 100.0% 43.0%
4652999 192.11.1.2 ↗ alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › CysS_C 0.58 44.0 3.51e-01 83.6% 42.9%
4373976 7552.1.1.1 ↗ a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.57 42.0 2.64e-01 80.8% 56.6%
4276439 2004.1.1.429 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.57 46.0 2.96e-01 90.4% 42.2%
2808872 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.57 48.0 4.58e-01 100.0% 84.4%
5073215 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.67e-01 76.7% 60.0%
3283825 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.55 38.0 3.22e-01 74.0% 54.8%
3740005 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.55 47.0 3.91e-01 98.6% 67.1%
3590947 1141.1.1.0 ↗ alpha arrays › Glycosyl transferase TarS linker domain › Glycosyl transferase TarS linker domain › Glycosyl transferase TarS linker domain 0.54 39.0 3.50e-01 78.1% 91.8%
3175217 622.1.1.27 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › Rer1 0.53 42.0 3.93e-01 89.0% 95.8%
2082477 3916.1.1.0 ↗ alpha arrays › Helical domain in PB2 › Helical domain in PB2 › Helical domain in PB2 0.53 37.0 3.71e-01 75.3% 89.2%
4034597 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.52 44.0 3.06e-01 100.0% 57.1%