←Back to structures

hypothetical_protein_TW95_gp0313

Euk-Vir

Pandoravirus_inopinatum

hypothetical_protein_TW95_gp0313__YP_009119282__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119282 ↗
Protein ID:
hypothetical_protein_TW95_gp0313
Kingdom:
euk

Quality

72.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_inopinatum

TaxID: 1605721

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 53-100_129-155
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_1127__YP_008438444__Pandoravirus_salinus__1349410__D56-94_137-156
D2 medium residues 156-267
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_1127__YP_008438444__Pandoravirus_salinus__1349410__D157-248
D3 medium residues 268-305_365-488
PDB
Domain cluster: rep: DEDDy_3-5_exonuclease_domain-containing__YP_009165206__Mollivirus_sibericum_Viruses.__X__D187-220_261-377
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.69 38.0 5.07e-01 78.4% 100.0%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.68 37.0 4.93e-01 80.2% 100.0%
1gx5A03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.66 48.0 5.37e-01 84.0% 99.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 38.0 3.76e-01 84.6% 54.5%
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.64 45.0 4.79e-01 82.7% 81.9%
2r7rA04 3.30.70.2480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 50.0 5.08e-01 80.9% 89.8%
1s5jA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.62 48.0 4.95e-01 81.5% 99.4%
2fiuA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 37.0 4.67e-01 82.7% 100.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 21.0 3.33e-01 76.5% 75.8%
3e3xA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.61 37.0 4.36e-01 81.5% 86.7%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.60 21.0 3.14e-01 72.2% 68.5%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 21.0 3.15e-01 72.2% 70.6%
5yuyA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 43.0 4.88e-01 84.6% 97.5%
5wm1A02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 40.0 4.75e-01 86.4% 100.0%
4x0qA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 46.0 4.85e-01 79.6% 98.6%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 38.0 4.39e-01 82.7% 92.0%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.59 43.0 4.63e-01 76.5% 90.3%
4wp3C00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.57 50.0 4.82e-01 94.4% 94.7%
1ybtB00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.57 47.0 4.63e-01 87.0% 93.0%
3mcsA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 45.0 4.08e-01 82.7% 98.6%
3ungC03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 43.0 4.65e-01 84.6% 94.7%
3gqcC01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 42.0 4.55e-01 93.8% 93.4%
1y10B02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 48.0 4.62e-01 92.6% 96.7%
3pjxA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 49.0 4.78e-01 96.9% 90.1%
2fgeA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 41.0 3.64e-01 79.0% 87.4%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 20.0 2.92e-01 71.0% 70.5%
2yq1C00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.53 38.0 4.28e-01 74.1% 96.2%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 28.0 3.19e-01 85.2% 66.1%
4zmuA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 46.0 4.76e-01 96.3% 98.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4215083 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.64 48.0 5.31e-01 93.2% 96.2%
3956622 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.64 46.0 5.18e-01 74.1% 99.2%
4141589 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.61 43.0 4.72e-01 84.6% 87.7%
4224759 304.48.1.89 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Csm1_B, Cas10-Cmr2_palm2 0.61 45.0 3.22e-01 74.1% 64.3%
4234725 304.28.1.4 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.61 36.0 4.52e-01 84.6% 97.9%
3961696 304.48.1.48 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 0.61 46.0 4.74e-01 77.2% 84.7%
4222754 304.41.1.1 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.61 38.0 3.98e-01 70.4% 67.3%
4210141 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.60 42.0 4.83e-01 84.6% 96.7%
3416938 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 38.0 4.45e-01 75.9% 89.6%
4886079 850.1.1.1 ↗ a+b three layers › Hypothetical protein Ta1206-like › Hypothetical protein Ta1206-like › Hypothetical protein Ta1206-like › IMS 0.60 42.0 4.85e-01 84.6% 97.5%
3260874 304.4.1.15 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › NIPSNAP 0.60 39.0 4.66e-01 70.4% 97.3%
4020518 304.4.1.15 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › NIPSNAP 0.59 41.0 4.54e-01 72.2% 90.3%
3571315 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.59 46.0 4.03e-01 80.9% 63.8%
4096785 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.59 43.0 4.77e-01 84.6% 96.8%
4946581 304.48.1.111 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS_HHH 0.59 43.0 4.73e-01 86.4% 93.8%
3288688 304.43.1.1 ↗ a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 › DUF503 0.58 35.0 4.38e-01 82.7% 100.0%
5053097 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.58 35.0 4.34e-01 84.0% 100.0%
4943031 304.28.1.38 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › CAA_C 0.58 44.0 4.21e-01 77.8% 91.9%
4292191 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.58 42.0 4.54e-01 84.0% 89.5%
3954242 321.1.1.1 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C 0.58 47.0 3.72e-01 85.2% 84.4%
3605466 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.58 44.0 3.99e-01 86.4% 59.1%
3958184 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 47.0 4.83e-01 85.2% 98.1%
3593319 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 47.0 4.49e-01 85.8% 89.7%
4982409 304.20.1.4 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.57 43.0 4.21e-01 77.8% 92.7%
3601928 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 44.0 4.01e-01 86.4% 61.0%
4218573 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 47.0 3.64e-01 87.0% 54.0%
4163139 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.57 42.0 4.65e-01 86.4% 94.6%
1681577 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.57 50.0 4.94e-01 94.4% 94.2%
3291429 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 45.0 4.58e-01 83.3% 85.0%
4336810 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.57 41.0 4.64e-01 84.6% 96.8%
3263205 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.57 42.0 4.09e-01 86.4% 68.9%
4649093 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.57 46.0 4.41e-01 86.4% 95.8%
5039662 304.48.1.112 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › SatD 0.56 43.0 4.78e-01 86.4% 100.0%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 23.0 3.52e-01 78.4% 93.8%
4952701 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.56 40.0 3.15e-01 85.8% 35.3%
4943195 304.107.1.1 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.56 44.0 3.63e-01 84.0% 64.4%
3205744 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.54 38.0 3.14e-01 71.0% 40.4%
4481814 304.41.1.1 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.54 38.0 3.87e-01 71.0% 99.4%
3600563 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.54 43.0 3.90e-01 85.8% 62.7%
3987638 304.48.1.49 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_GdpP 0.53 41.0 4.30e-01 84.6% 88.0%
3599389 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 42.0 3.82e-01 84.6% 97.1%
3186517 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.52 42.0 3.93e-01 85.8% 94.0%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 22.0 3.27e-01 80.9% 88.0%
3280378 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 45.0 4.56e-01 96.3% 99.4%
3252343 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.51 39.0 3.40e-01 80.9% 53.5%
5009620 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.50 36.0 4.15e-01 83.3% 100.0%
D4 medium residues 306-364
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lpnA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.63 48.0 4.00e-01 83.1% 54.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3490105 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.51 39.0 3.74e-01 86.4% 75.7%