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hypothetical_protein_TW95_gp0602
Euk-VirPandoravirus_inopinatum
hypothetical_protein_TW95_gp0602__YP_009119571__Pandoravirus_inopinatum__1605721
Identity
- Accession:
- YP_009119571 ↗
- Protein ID:
- hypothetical_protein_TW95_gp0602
- Kingdom:
- euk
Quality
69.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-54
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p1oB01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.88 | 63.0 | 7.13e-01 | 96.1% | 100.0% |
| 3ogkB01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.80 | 54.0 | 5.87e-01 | 100.0% | 87.8% |
| 1ihuA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 47.0 | 3.03e-01 | 82.4% | 20.8% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.58 | 47.0 | 3.51e-01 | 100.0% | 42.3% |
| 3kzxA02 | 1.10.150.730 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.55 | 41.0 | 3.92e-01 | 80.4% | 93.5% |
| 2oyyA00 | 6.10.80.10 | Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) | 0.53 | 42.0 | 3.74e-01 | 86.3% | 91.5% |
| 2wadB03 | 1.10.10.1230 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin-binding protein, N-terminal non-catalytic domain, head sub-domain | 0.53 | 39.0 | 3.28e-01 | 80.4% | 96.7% |
| 5y6qB02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.51 | 37.0 | 3.06e-01 | 84.3% | 71.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3194782 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.86 | 78.0 | 4.41e-01 | 100.0% | 10.6% |
| 3636855 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.85 | 74.0 | 7.46e-01 | 94.1% | 100.0% |
| 4012417 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.85 | 77.0 | 6.56e-01 | 100.0% | 67.5% |
| 3201310 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.84 | 76.0 | 7.21e-01 | 100.0% | 88.3% |
| 3206488 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.81 | 64.0 | 6.50e-01 | 100.0% | 90.0% |
| None | — | 0.79 | 72.0 | 7.00e-01 | 100.0% | 92.7% | |
| 3688868 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.77 | 68.0 | 5.72e-01 | 98.0% | 60.0% |
| 3730037 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.75 | 66.0 | 6.52e-01 | 100.0% | 94.5% |
| 4022608 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.75 | 68.0 | 4.01e-01 | 100.0% | 13.6% |
| 3532924 | 174.1.1.43 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 | 0.62 | 48.0 | 3.44e-01 | 88.2% | 76.5% |
| 3973765 | 564.1.1.3 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › DUF4880 | 0.58 | 47.0 | 4.51e-01 | 98.0% | 80.0% |
| 5026068 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.57 | 49.0 | 3.19e-01 | 100.0% | 46.3% |
| 3553058 | 605.3.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain | 0.57 | 42.0 | 3.19e-01 | 84.3% | 37.1% |
| 3255177 | 109.4.1.682 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RasGEF_N | 0.56 | 45.0 | 3.39e-01 | 100.0% | 50.6% |
| 4109357 | 2004.1.1.442 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 | 0.52 | 43.0 | 2.65e-01 | 96.1% | 24.0% |
D2
high
residues 121-311
D3
medium
residues 60-106
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kvdA02 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.67 | 52.0 | 4.93e-01 | 100.0% | 72.4% |
| 3ufeA02 | 1.20.58.1950 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 52.0 | 5.08e-01 | 95.7% | 94.3% |
| 3b0bB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.61 | 46.0 | 3.71e-01 | 85.1% | 40.2% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.61 | 48.0 | 3.54e-01 | 100.0% | 33.5% |
| 1bxiA00 | 1.10.1200.20 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Colicin E immunity protein | 0.60 | 50.0 | 4.30e-01 | 100.0% | 84.3% |
| 1ic8A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 46.0 | 3.88e-01 | 93.6% | 66.0% |
| 3g36B00 | 1.20.890.10 | Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain | 0.59 | 45.0 | 4.45e-01 | 85.1% | 78.4% |
| 4bouA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.59 | 46.0 | 3.40e-01 | 91.5% | 51.8% |
| 3r7tA02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.59 | 40.0 | 3.32e-01 | 72.3% | 96.7% |
| 3h87B00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.58 | 46.0 | 3.31e-01 | 89.4% | 37.7% |
| 7pl7A01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.56 | 47.0 | 3.41e-01 | 100.0% | 80.9% |
| 6aveA01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.56 | 38.0 | 3.43e-01 | 74.5% | 50.0% |
| 4qiwK00 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.55 | 41.0 | 3.92e-01 | 80.9% | 83.9% |
| 6n39A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 42.0 | 2.90e-01 | 93.6% | 86.8% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 47.0 | 3.96e-01 | 100.0% | 89.2% |
| 2v40A02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.54 | 36.0 | 3.10e-01 | 72.3% | 43.2% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.54 | 44.0 | 3.63e-01 | 97.9% | 96.9% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.53 | 41.0 | 3.25e-01 | 93.6% | 88.0% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.53 | 39.0 | 3.41e-01 | 93.6% | 48.3% |
| 1aj3A00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 36.0 | 3.04e-01 | 74.5% | 73.5% |
| 3dxlA02 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.52 | 43.0 | 3.14e-01 | 100.0% | 43.4% |
| 1x3zA03 | 1.10.1740.90 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.52 | 37.0 | 3.22e-01 | 83.0% | 68.2% |
| 3iylB02 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.52 | 40.0 | 3.14e-01 | 97.9% | 52.2% |
| 8bs9A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 42.0 | 2.62e-01 | 91.5% | 30.0% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.52 | 43.0 | 3.65e-01 | 100.0% | 74.4% |
| 7p5hB03 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.51 | 36.0 | 2.99e-01 | 76.6% | 82.0% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.51 | 34.0 | 3.13e-01 | 72.3% | 89.6% |
| 2v4jA01 | 6.10.140.1420 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 36.0 | 3.45e-01 | 85.1% | 92.1% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 42.0 | 3.26e-01 | 97.9% | 75.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3505931 | 6130.1.1.0 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain | 0.63 | 53.0 | 4.72e-01 | 97.9% | 81.4% |
| 3262947 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.62 | 42.0 | 3.09e-01 | 72.3% | 39.3% |
| 3202225 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.60 | 41.0 | 2.81e-01 | 74.5% | 37.4% |
| 3989539 | 3457.1.1.0 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease | 0.59 | 42.0 | 2.98e-01 | 78.7% | 36.3% |
| 4527734 | 101.1.1.36 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN | 0.58 | 44.0 | 4.00e-01 | 83.0% | 95.4% |
| 3484089 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 44.0 | 3.79e-01 | 87.2% | 58.7% |
| 3701991 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 45.0 | 3.43e-01 | 91.5% | 70.4% |
| 3839514 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.57 | 49.0 | 3.57e-01 | 97.9% | 78.5% |
| 4060837 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.57 | 45.0 | 2.83e-01 | 87.2% | 31.4% |
| 5068089 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.57 | 41.0 | 3.29e-01 | 85.1% | 36.5% |
| 3684450 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.55 | 43.0 | 3.93e-01 | 97.9% | 62.9% |
| 4962257 | 101.1.1.542 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF790 | 0.54 | 35.0 | 3.16e-01 | 74.5% | 45.7% |
| 4265467 | 2486.1.1.6 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ACCA | 0.54 | 42.0 | 2.64e-01 | 97.9% | 69.7% |
| 3940544 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 43.0 | 3.43e-01 | 93.6% | 54.3% |
| 4332463 | 2003.1.2.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 45.0 | 2.94e-01 | 97.9% | 91.1% |
| 3393285 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.52 | 37.0 | 3.04e-01 | 80.9% | 44.8% |
| 3957615 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.51 | 37.0 | 3.01e-01 | 87.2% | 38.1% |
| 4192155 | 601.1.1.43 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Serendipity_A | 0.50 | 41.0 | 3.18e-01 | 97.9% | 82.5% |