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hypothetical_protein_TW95_gp0842

Euk-Vir

Pandoravirus_inopinatum

hypothetical_protein_TW95_gp0842__YP_009119811__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119811 ↗
Protein ID:
hypothetical_protein_TW95_gp0842
Kingdom:
euk

Quality

60.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_inopinatum

TaxID: 1605721

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-92
PDB
Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008318724__Pandoravirus_dulcis__1349409__D16-76
D2 medium residues 93-156_177-210
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.64 46.0 4.68e-01 73.5% 77.7%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.64 44.0 4.59e-01 71.4% 84.8%
1qlbA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.57 41.0 3.90e-01 76.5% 66.1%
1zoyA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.56 41.0 3.90e-01 76.5% 66.7%
2wdqA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.56 41.0 3.92e-01 77.6% 67.5%
1ho8A02 1.25.40.150 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › V-type ATPase, subunit H, C-terminal domain 0.56 41.0 3.97e-01 79.6% 68.8%
1mhyG01 1.20.1280.10 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 0.55 35.0 3.98e-01 72.4% 91.2%
3ea5D00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 49.0 2.87e-01 99.0% 18.6%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.53 41.0 3.86e-01 82.7% 66.9%
4xaiB02 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 42.0 3.36e-01 85.7% 76.5%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.52 40.0 3.76e-01 81.6% 84.0%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.52 39.0 3.83e-01 79.6% 87.7%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.52 29.0 3.50e-01 87.8% 83.1%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.50 36.0 3.60e-01 75.5% 89.3%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.50 31.0 3.04e-01 87.8% 58.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3286501 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 48.0 4.29e-01 90.8% 95.9%
None — 0.57 47.0 3.90e-01 90.8% 85.6%
4144324 3811.1.1.1 ↗ alpha bundles › Decorin-binding protein A › Decorin-binding protein A › Decorin-binding protein A › Decorin_bind 0.56 43.0 3.59e-01 80.6% 80.6%
3677155 109.4.1.570 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps8 0.56 49.0 3.13e-01 100.0% 19.6%
3692738 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 46.0 4.64e-01 91.8% 99.0%
3736265 109.4.1.862 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZW10_C2 0.55 47.0 2.94e-01 96.9% 28.5%
4033699 621.1.1.10 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › DUF4118 0.54 42.0 3.92e-01 84.7% 76.8%
3696838 109.4.1.1646 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Foie-gras_1, PF29907 0.54 47.0 3.84e-01 100.0% 69.7%
3738337 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.54 39.0 3.81e-01 75.5% 78.1%
3596405 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 47.0 4.38e-01 100.0% 78.4%
3166728 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 3.54e-01 100.0% 40.9%
3931056 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.52 38.0 3.74e-01 79.6% 72.4%
3697063 109.4.1.328 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2428 0.51 42.0 3.57e-01 92.9% 85.7%
3166558 109.4.1.1323 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IMB1 0.51 44.0 3.28e-01 100.0% 36.4%
3973500 601.1.2.144 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › HBM 0.51 37.0 3.58e-01 78.6% 80.0%
3331253 3563.1.1.1 ↗ alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC 0.50 41.0 3.14e-01 90.8% 62.9%
D3 medium residues 211-270
PDB
Domain cluster: representative
CATH (75)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zheD01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.76 66.0 4.57e-01 100.0% 37.1%
3lcvB02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.75 61.0 4.18e-01 88.3% 52.0%
2ff4A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.74 65.0 4.60e-01 98.3% 33.0%
2p58C00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.73 55.0 4.50e-01 100.0% 43.8%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.73 63.0 5.43e-01 100.0% 64.6%
2l6jA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 62.0 5.03e-01 95.0% 79.3%
2kckA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 57.0 4.64e-01 100.0% 46.4%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.72 63.0 5.35e-01 100.0% 63.4%
4y6cA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 59.0 4.09e-01 93.3% 31.1%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.71 58.0 4.70e-01 91.7% 63.9%
2prrA02 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.71 52.0 4.09e-01 90.0% 37.0%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 53.0 4.46e-01 91.7% 47.5%
1konA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.70 56.0 5.37e-01 91.7% 76.5%
2vq2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.70 53.0 3.60e-01 93.3% 22.3%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.70 56.0 3.79e-01 93.3% 24.2%
4u04B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.70 52.0 4.58e-01 93.3% 54.5%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.70 58.0 4.90e-01 91.7% 67.0%
4n5qA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 61.0 4.04e-01 100.0% 25.7%
3ljnA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 53.0 3.34e-01 96.7% 16.4%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.69 54.0 5.57e-01 88.3% 98.2%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.69 59.0 5.11e-01 100.0% 91.8%
4ebjA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.69 54.0 4.23e-01 86.7% 66.2%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.68 53.0 4.24e-01 85.0% 63.3%
7ewfA01 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 59.0 3.94e-01 98.3% 37.7%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 59.0 4.24e-01 100.0% 51.1%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 60.0 5.06e-01 100.0% 84.5%
4jhrB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 58.0 3.76e-01 100.0% 61.9%
1e2aA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.67 59.0 4.98e-01 100.0% 83.3%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.67 56.0 4.39e-01 93.3% 47.7%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.67 46.0 4.58e-01 73.3% 73.8%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.67 56.0 4.89e-01 98.3% 60.6%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.67 55.0 4.44e-01 93.3% 86.0%
7nmqA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.67 58.0 3.60e-01 96.7% 72.0%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.67 52.0 4.21e-01 85.0% 58.3%
6z0fA02 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.66 51.0 3.68e-01 85.0% 30.1%
3ph0C00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 52.0 5.41e-01 100.0% 100.0%
3dzaA01 1.20.120.1940 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YfdX protein domain 0.66 56.0 4.56e-01 96.7% 74.4%
4kvmA02 1.25.40.1010 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 55.0 3.74e-01 100.0% 25.9%
4xaxB02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.66 52.0 4.46e-01 88.3% 99.0%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 58.0 3.93e-01 100.0% 43.2%
4p9fA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.66 52.0 3.94e-01 86.7% 72.9%
8amzT01 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 56.0 3.73e-01 100.0% 51.5%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.65 44.0 4.64e-01 76.7% 78.8%
4gyoB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 55.0 4.31e-01 98.3% 94.2%
2ouwB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.65 55.0 4.26e-01 98.3% 42.6%
3t33A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.65 55.0 3.34e-01 96.7% 81.8%
3bqoA00 1.25.40.210 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain 0.65 56.0 3.89e-01 98.3% 81.2%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.64 55.0 4.98e-01 100.0% 95.3%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.64 53.0 4.42e-01 96.7% 65.5%
3o2tA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 53.0 3.47e-01 100.0% 21.7%
7yb9A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 54.0 3.63e-01 93.3% 53.2%
7jv7B01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 45.0 3.45e-01 76.7% 33.6%
3qnkC00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 56.0 3.29e-01 100.0% 54.0%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.63 54.0 4.90e-01 96.7% 75.9%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 52.0 4.11e-01 91.7% 53.2%
7y4rB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.63 51.0 4.32e-01 98.3% 52.8%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.63 54.0 3.84e-01 98.3% 48.7%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 53.0 4.10e-01 100.0% 84.6%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 53.0 4.02e-01 95.0% 73.4%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 51.0 4.80e-01 93.3% 74.7%
4u72A01 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 54.0 3.67e-01 100.0% 68.5%
4k51B00 1.25.40.860 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 52.0 3.93e-01 100.0% 66.7%
1wdyA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.60 49.0 3.18e-01 100.0% 19.3%
4b0zA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 52.0 3.55e-01 100.0% 51.1%
3ehrA02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.59 45.0 3.71e-01 100.0% 44.0%
2hr2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 48.0 3.74e-01 98.3% 65.4%
1x4pA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.58 51.0 4.94e-01 98.3% 90.9%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 49.0 4.90e-01 100.0% 93.7%
2idgA00 1.10.3480.10 Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like 0.58 46.0 3.52e-01 93.3% 37.1%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.57 47.0 4.54e-01 96.7% 82.1%
1a59A02 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.57 48.0 4.03e-01 98.3% 84.3%
3qhbA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 48.0 3.54e-01 100.0% 82.1%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 40.0 3.27e-01 76.7% 38.7%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 4.25e-01 86.7% 87.5%
2zgdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.50 41.0 3.57e-01 95.0% 77.3%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3658241 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.79 64.0 4.46e-01 88.3% 33.7%
3468311 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.78 64.0 3.86e-01 88.3% 17.6%
3592461 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 62.0 4.64e-01 100.0% 37.1%
3313969 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.75 62.0 3.52e-01 100.0% 9.2%
3605212 109.4.1.44 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 0.74 61.0 3.41e-01 93.3% 10.1%
3440212 601.18.1.13 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › Vwaint 0.74 62.0 5.20e-01 95.0% 69.5%
3615174 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 65.0 3.58e-01 98.3% 43.4%
5052968 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.73 58.0 3.54e-01 93.3% 14.8%
3820220 109.4.1.585 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF627 0.72 59.0 4.19e-01 91.7% 30.3%
3781527 109.4.1.44 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 0.71 61.0 3.93e-01 98.3% 22.7%
5074258 608.1.1.0 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like 0.71 57.0 5.60e-01 98.3% 83.1%
4964888 601.18.1.32 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › PF26403 0.71 60.0 5.49e-01 95.0% 79.7%
3586131 109.4.1.1333 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35, PF27614 0.71 61.0 3.39e-01 100.0% 10.1%
4433075 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.71 60.0 5.31e-01 96.7% 81.1%
3494695 109.4.1.44 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 0.71 62.0 3.51e-01 100.0% 10.4%
4540842 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.71 60.0 4.41e-01 98.3% 60.6%
4096159 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.71 59.0 5.32e-01 96.7% 85.9%
3613861 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 61.0 3.95e-01 100.0% 22.2%
3689807 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 61.0 4.38e-01 98.3% 40.0%
3949264 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 55.0 4.55e-01 98.3% 47.3%
4437441 109.4.1.1333 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35, PF27614 0.70 61.0 3.92e-01 100.0% 21.3%
3311403 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.70 60.0 3.66e-01 98.3% 73.2%
3504528 109.4.1.1333 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35, PF27614 0.70 60.0 3.59e-01 100.0% 21.9%
185416 109.21.1.4 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C,Sec16 0.70 57.0 3.48e-01 91.7% 19.0%
3918097 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.70 58.0 3.43e-01 93.3% 12.0%
3702456 109.4.1.44 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 0.70 60.0 3.52e-01 100.0% 13.7%
4030142 109.4.1.44 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 0.70 61.0 3.39e-01 100.0% 8.5%
3566734 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 57.0 3.83e-01 90.0% 58.3%
4610148 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 61.0 3.65e-01 100.0% 15.6%
3928123 109.4.1.44 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 0.69 59.0 3.53e-01 100.0% 17.8%
4946490 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 58.0 4.01e-01 95.0% 42.9%
5038668 4266.2.1.0 ↗ alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like 0.69 57.0 5.05e-01 93.3% 72.2%
3654859 109.4.1.1333 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35, PF27614 0.69 59.0 3.29e-01 98.3% 16.7%
3373281 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.69 62.0 3.66e-01 100.0% 18.7%
3315274 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 60.0 4.30e-01 100.0% 76.1%
3737203 109.4.1.142 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K 0.68 56.0 3.69e-01 88.3% 67.0%
3797929 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.68 53.0 3.84e-01 86.7% 35.0%
3369329 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.68 61.0 3.70e-01 100.0% 22.1%
4014510 109.4.1.292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like 0.68 57.0 3.89e-01 93.3% 78.6%
3293626 109.4.1.44 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 0.68 58.0 3.24e-01 100.0% 8.3%
3833089 109.4.1.44 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 0.67 58.0 3.69e-01 100.0% 22.6%
3742057 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 57.0 3.37e-01 100.0% 22.5%
3492325 109.4.1.602 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dor1 0.67 59.0 4.27e-01 100.0% 37.1%
5012157 605.1.1.354 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1 0.67 48.0 4.31e-01 76.7% 62.4%
3213744 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 56.0 4.13e-01 100.0% 41.0%
3834069 109.4.1.81 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF-3c_N 0.67 58.0 3.59e-01 100.0% 16.9%
3830808 109.4.1.1287 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_8, TPR_16 0.67 56.0 3.45e-01 93.3% 16.3%
3491049 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 55.0 3.56e-01 93.3% 19.6%
3168021 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.66 52.0 4.75e-01 86.7% 72.5%
3960857 628.1.1.1 ↗ alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.66 50.0 3.60e-01 81.7% 59.4%
4951600 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.66 54.0 4.34e-01 98.3% 45.6%
4270503 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.65 55.0 5.01e-01 98.3% 72.9%
5075048 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.65 56.0 4.51e-01 100.0% 48.0%
1822946 109.4.1.292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like 0.65 51.0 3.63e-01 86.7% 48.4%
None — 0.65 52.0 4.46e-01 91.7% 54.6%
3389963 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.65 54.0 5.24e-01 100.0% 95.7%
4989327 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.65 54.0 4.33e-01 100.0% 45.4%
3870340 109.4.1.119 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRF 0.65 55.0 3.77e-01 96.7% 78.1%
3695483 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 54.0 3.42e-01 100.0% 19.2%
4522025 3584.1.1.1 ↗ alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA_pol3_finger 0.64 53.0 3.75e-01 96.7% 27.6%
3996513 109.4.1.362 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_8 0.64 55.0 4.07e-01 98.3% 37.0%
3968126 628.1.1.1 ↗ alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.64 51.0 3.83e-01 86.7% 68.7%
4012164 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.64 54.0 5.29e-01 98.3% 87.7%
3269094 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.64 53.0 5.30e-01 98.3% 93.3%
5048681 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.64 56.0 4.44e-01 100.0% 52.8%
3616364 3877.1.1.1 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.63 52.0 3.60e-01 98.3% 90.6%
3466815 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 52.0 4.02e-01 91.7% 41.5%
4410416 109.4.1.292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like 0.63 56.0 3.85e-01 100.0% 29.0%
3641205 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 51.0 3.46e-01 91.7% 23.8%
3696047 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 51.0 3.66e-01 93.3% 32.1%
3353941 1134.1.1.7 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.62 48.0 4.79e-01 100.0% 86.2%
5051839 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.62 51.0 4.73e-01 95.0% 83.7%
4959585 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.60 49.0 3.21e-01 100.0% 20.8%
5050917 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.56 47.0 4.37e-01 98.3% 85.0%
3399531 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.55 48.0 4.08e-01 100.0% 85.0%
5051840 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.53 42.0 3.82e-01 91.7% 72.9%
1942969 1136.1.1.1 ↗ a+b complex topology › ssRNA bacteriophage MS2 maturation protein › ssRNA bacteriophage MS2 maturation protein › ssRNA bacteriophage MS2 maturation protein › Phage_mat-A 0.53 43.0 2.69e-01 100.0% 62.7%
D4 medium residues 271-283_298-343_362-374
PDB