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hypothetical_protein_TW95_gp1297

Euk-Vir

Pandoravirus_inopinatum

hypothetical_protein_TW95_gp1297__YP_009120266__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009120266 ↗
Protein ID:
hypothetical_protein_TW95_gp1297
Kingdom:
euk

Quality

75.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_inopinatum

TaxID: 1605721

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 154-256_279-298
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.62 29.0 3.61e-01 77.2% 70.7%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.54 29.0 3.36e-01 74.0% 70.9%
6ofsA03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 36.0 3.04e-01 72.4% 77.7%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 27.0 3.02e-01 100.0% 64.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3329735 327.11.2.37 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DEAH11_1st 0.58 26.0 3.31e-01 74.0% 71.4%
3969285 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.57 26.0 3.09e-01 89.4% 58.8%
3616815 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.51 25.0 3.49e-01 70.7% 96.7%
D2 medium residues 1-40_263-278
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jz6A01 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.69 42.0 4.36e-01 83.9% 66.0%
4v19400 6.20.130.20 Special › Other non-globular › Ribosomal Protein L25; Chain P › Mitochondrial ribosomal protein L55 0.65 38.0 4.13e-01 94.6% 71.1%
2v1yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 43.0 3.77e-01 87.5% 96.6%
3mhzA03 3.10.20.110 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 36.0 2.88e-01 71.4% 52.1%
2dajA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 43.0 3.77e-01 94.6% 84.6%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 42.0 2.71e-01 89.3% 31.1%
3vqiD03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 40.0 3.73e-01 87.5% 100.0%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 41.0 2.76e-01 89.3% 80.3%
2gbmA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 39.0 3.52e-01 83.9% 97.5%
3tuoC00 3.10.20.710 Alpha Beta › Roll › Ubiquitin-like (UB roll) › SATB, ubiquitin-like oligomerisation domain 0.52 41.0 3.56e-01 91.1% 95.7%
2if1A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.52 37.0 2.94e-01 78.6% 65.9%
2y27B01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 41.0 2.70e-01 98.2% 68.6%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 40.0 3.48e-01 89.3% 96.9%
1z2mA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 40.0 3.68e-01 89.3% 96.1%
3lp5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 37.0 2.43e-01 78.6% 91.2%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3403629 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.57 44.0 3.71e-01 87.5% 86.0%
None — 0.56 45.0 3.78e-01 94.6% 80.0%
3499258 221.1.1.168 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd, PI3K_p85B 0.55 42.0 2.69e-01 87.5% 33.0%
3585365 221.1.1.168 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd, PI3K_p85B 0.55 43.0 2.70e-01 87.5% 27.7%
3749350 221.1.1.11 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_p85B 0.54 42.0 3.54e-01 89.3% 82.9%
3477071 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.53 43.0 3.73e-01 94.6% 87.4%
3275499 221.1.1.8 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd 0.53 42.0 2.64e-01 92.9% 27.6%
3591902 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.53 41.0 3.13e-01 96.4% 33.8%
3910235 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.53 42.0 3.63e-01 92.9% 97.9%
3474381 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.53 41.0 2.56e-01 89.3% 23.3%
3925541 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.53 42.0 3.33e-01 94.6% 65.4%
3453248 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 34.0 3.44e-01 92.9% 67.3%
3258182 221.1.1.8 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd 0.52 43.0 2.82e-01 98.2% 36.4%
3641865 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 42.0 2.83e-01 100.0% 94.5%
3632936 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 44.0 2.94e-01 100.0% 93.5%
3957330 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 41.0 2.69e-01 94.6% 92.2%
3417260 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.51 41.0 3.61e-01 92.9% 92.2%
None — 0.51 36.0 2.39e-01 78.6% 67.8%
3705568 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 36.0 2.75e-01 98.2% 30.4%
3518650 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 40.0 2.76e-01 98.2% 99.3%
3927309 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.51 40.0 3.29e-01 92.9% 73.3%
3171102 221.1.1.113 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.51 41.0 3.29e-01 94.6% 81.6%
3571937 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 40.0 3.45e-01 89.3% 80.0%
3400530 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 41.0 3.25e-01 94.6% 92.3%
3322134 221.1.1.44 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.51 39.0 3.56e-01 87.5% 98.8%
5078418 7584.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.51 39.0 2.59e-01 87.5% 68.0%
5009614 239.4.1.3 ↗ beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N_2 0.51 34.0 3.02e-01 94.6% 43.2%
3940885 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 41.0 3.48e-01 94.6% 97.0%
4015000 7573.1.1.0 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like 0.50 37.0 2.56e-01 82.1% 26.8%
3958749 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 37.0 2.85e-01 85.7% 98.1%
3881220 221.1.1.12 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD 0.50 41.0 3.53e-01 94.6% 85.3%
D3 medium residues 41-151_302-318
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.64 40.0 4.78e-01 84.4% 96.3%
1j8yF01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.60 34.0 4.07e-01 85.2% 81.4%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 32.0 2.88e-01 100.0% 42.8%
2d05A02 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.51 31.0 3.33e-01 97.7% 68.5%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.51 32.0 3.33e-01 71.9% 67.5%
2gs4A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 44.0 4.14e-01 100.0% 77.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5064355 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.61 29.0 3.39e-01 92.2% 62.2%
4675311 632.19.1.5 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › TMEM208_SND2 0.55 40.0 4.13e-01 75.0% 84.2%
5041273 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.54 37.0 4.14e-01 86.7% 86.7%
3253937 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.53 37.0 3.82e-01 86.7% 75.0%
3488922 109.3.1.181 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Serinc 0.53 40.0 3.82e-01 79.7% 69.7%
4346047 109.3.1.463 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF29508 0.52 41.0 3.92e-01 95.3% 71.0%
4030161 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.51 37.0 3.76e-01 76.6% 94.6%
3954544 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.50 41.0 3.37e-01 86.7% 81.7%