←Back to structures
hypothetical_protein_TW95_gp1767
Euk-VirPandoravirus_inopinatum
hypothetical_protein_TW95_gp1767__YP_009120736__Pandoravirus_inopinatum__1605721
Identity
- Accession:
- YP_009120736 ↗
- Protein ID:
- hypothetical_protein_TW95_gp1767
- Kingdom:
- euk
Quality
74.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-140
Domain cluster:
rep: hypothetical_protein_psal_cds_100__YP_008436593__Pandoravirus_salinus__1349410__D47-141_160-179
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19166.7 best | DUF5848 | 86.7 | 1.30e-24 | 53.1% | 100.0% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.65 | 46.0 | 4.69e-01 | 95.4% | 74.2% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.65 | 40.0 | 4.09e-01 | 86.2% | 61.5% |
| 3i01A01 | 1.20.1270.30 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.65 | 46.0 | 4.13e-01 | 73.1% | 77.4% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.64 | 40.0 | 4.09e-01 | 86.2% | 63.3% |
| 1dkxA02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 31.0 | 3.85e-01 | 74.6% | 73.8% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 30.0 | 3.84e-01 | 75.4% | 77.0% |
| 5lnxF01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.57 | 31.0 | 3.24e-01 | 89.2% | 56.8% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.54 | 32.0 | 3.71e-01 | 100.0% | 84.9% |
| 3r64A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 49.0 | 3.78e-01 | 100.0% | 73.3% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.53 | 36.0 | 4.16e-01 | 99.2% | 98.9% |
| 1gqeA01 | 1.20.58.410 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor | 0.53 | 39.0 | 4.15e-01 | 75.4% | 92.0% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.53 | 38.0 | 3.06e-01 | 75.4% | 78.2% |
| 1b0bA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 41.0 | 4.07e-01 | 83.1% | 98.6% |
| 4wpcA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.52 | 38.0 | 2.96e-01 | 75.4% | 69.3% |
| 3frrA00 | 1.20.1260.60 | Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 | 0.52 | 43.0 | 3.83e-01 | 87.7% | 76.3% |
| 2xgcA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 33.0 | 3.40e-01 | 90.0% | 68.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3211724 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.73 | 41.0 | 4.78e-01 | 75.4% | 75.8% |
| 3182290 | 174.1.1.4 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4267 | 0.60 | 39.0 | 4.00e-01 | 75.4% | 66.9% |
| 3758589 | 4177.1.1.4 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › IMD | 0.59 | 42.0 | 3.45e-01 | 73.1% | 71.1% |
| 3391570 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.58 | 45.0 | 3.82e-01 | 93.1% | 50.7% |
| 4600613 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.58 | 38.0 | 3.88e-01 | 86.2% | 66.9% |
| 3208746 | 5001.1.1.85 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin | 0.56 | 41.0 | 3.44e-01 | 75.4% | 87.1% |
| 3317233 | 3567.1.1.74 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › DUF716 | 0.56 | 44.0 | 3.71e-01 | 83.8% | 90.0% |
| 3410594 | 4177.1.1.6 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3_WASP_bdg | 0.55 | 41.0 | 3.46e-01 | 75.4% | 81.0% |
| 5062467 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.54 | 35.0 | 4.28e-01 | 82.3% | 98.8% |
| 4034551 | 5065.1.1.2 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD | 0.54 | 42.0 | 3.25e-01 | 84.6% | 91.7% |
| 3501195 | 601.1.1.112 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Gaa1 | 0.54 | 47.0 | 3.74e-01 | 93.8% | 79.6% |
| 3466160 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.53 | 38.0 | 3.87e-01 | 75.4% | 79.2% |
| 4054419 | 604.12.1.78 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › FUSC | 0.52 | 40.0 | 3.72e-01 | 100.0% | 63.6% |
| 3601895 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.52 | 44.0 | 3.64e-01 | 91.5% | 82.5% |
| 4479019 | 5051.1.1.2 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease | 0.52 | 47.0 | 3.15e-01 | 100.0% | 49.8% |
| 3316951 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.51 | 38.0 | 3.09e-01 | 75.4% | 70.0% |
| 4249009 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.51 | 37.0 | 3.91e-01 | 76.2% | 84.2% |
| 3736853 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.51 | 47.0 | 3.96e-01 | 100.0% | 72.4% |
| 3260599 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.50 | 41.0 | 3.22e-01 | 86.2% | 71.7% |
| 4002072 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.50 | 42.0 | 4.12e-01 | 98.5% | 82.9% |
D2
high
residues 155-274
Domain cluster:
rep: hypothetical_protein_pdul_cds_100__YP_008318674__Pandoravirus_dulcis__1349409__D193-319
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2aujD03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.79 | 32.0 | 4.46e-01 | 99.2% | 74.2% |
| 2aq5A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.67 | 33.0 | 2.35e-01 | 82.5% | 16.5% |
| 3hjhA02 | 3.30.2060.10 | Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain | 0.65 | 29.0 | 3.38e-01 | 82.5% | 55.8% |
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.62 | 27.0 | 3.71e-01 | 90.0% | 80.3% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.58 | 31.0 | 3.25e-01 | 85.0% | 55.6% |
| 3r07C00 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.56 | 33.0 | 3.77e-01 | 92.5% | 79.5% |
| 2m4lA00 | 2.40.128.360 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 34.0 | 3.72e-01 | 84.2% | 77.8% |
| 8p2aA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.53 | 31.0 | 3.55e-01 | 88.3% | 78.2% |
| 3a5zD02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 26.0 | 3.41e-01 | 98.3% | 87.5% |
| 2o5nA02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.51 | 47.0 | 4.30e-01 | 100.0% | 90.4% |
| 3it8D01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.51 | 46.0 | 4.01e-01 | 99.2% | 85.0% |
| 4ffeX00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.51 | 46.0 | 4.30e-01 | 99.2% | 91.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4135015 | 506.2.1.2 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter | 0.73 | 32.0 | 3.69e-01 | 83.3% | 55.6% |
| 4256884 | 506.2.1.2 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter | 0.73 | 31.0 | 3.62e-01 | 82.5% | 53.3% |
| 5051212 | 506.2.1.2 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter | 0.73 | 32.0 | 3.69e-01 | 84.2% | 55.6% |
| 4981069 | 2484.2.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain | 0.68 | 32.0 | 4.20e-01 | 83.3% | 81.5% |
| 3965920 | 506.2.1.2 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter | 0.67 | 30.0 | 3.47e-01 | 84.2% | 55.6% |
| 3235763 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.65 | 35.0 | 4.14e-01 | 100.0% | 76.2% |
| 3390600 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.64 | 35.0 | 4.40e-01 | 80.8% | 86.7% |
| 5014493 | 331.3.1.12 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like | 0.64 | 38.0 | 3.01e-01 | 92.5% | 30.0% |
| 4969490 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.54 | 38.0 | 4.34e-01 | 74.2% | 98.9% |
| 5070879 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 37.0 | 4.23e-01 | 76.7% | 95.6% |
| 4979924 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 38.0 | 4.28e-01 | 74.2% | 98.9% |
| 4981066 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.53 | 38.0 | 4.18e-01 | 74.2% | 93.7% |
| 5068879 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.53 | 38.0 | 4.08e-01 | 74.2% | 91.0% |
| 5052973 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.53 | 44.0 | 3.48e-01 | 92.5% | 99.6% |
| 4939725 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.53 | 44.0 | 3.33e-01 | 91.7% | 87.8% |
| 5016773 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.52 | 44.0 | 4.11e-01 | 91.7% | 96.0% |
| 3863169 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.52 | 46.0 | 4.09e-01 | 96.7% | 93.1% |
| 3928388 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.52 | 26.0 | 2.16e-01 | 74.2% | 26.5% |
| 5066647 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.52 | 37.0 | 4.14e-01 | 77.5% | 96.7% |
| 3599073 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.51 | 39.0 | 2.93e-01 | 80.0% | 87.1% |
| 5033905 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.51 | 43.0 | 3.39e-01 | 91.7% | 99.2% |
| 1219851 | 233.1.1.7 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › 2L_N_poxvirus | 0.51 | 46.0 | 4.01e-01 | 99.2% | 85.0% |