hypothetical_protein_VARVgp103

Euk-Vir

Variola_virus

hypothetical_protein_VARVgp103__NP_042147__Variola_virus__10255

Identity

82.2 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Orthopoxvirus› Variola_virus

TaxID: 10255

View cluster (35 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-226

PDB

Domain cluster: rep: major_capsid_protein__YP_009508644__Common_midwife_toad_virus__540070__D48-85_114-155_177-212_243-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03340.20 best	Pox_Rif	304.7	1.60e-90	100.0%	34.3%

D2 medium residues 227-270_428-551

PDB

Domain cluster: rep: putative_capsid_protein_4__YP_003969808__Cafeteria_roenbergensis_virus_BV-PW1__693272__D326-494

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03340.20 best	Pox_Rif	200.3	6.70e-59	72.6%	22.3%
PF03340.20	Pox_Rif	59.6	3.00e-16	27.4%	8.3%

D3 medium residues 271-300_359-381

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03340.20 best	Pox_Rif	42.5	4.50e-11	56.6%	5.5%
PF03340.20	Pox_Rif	27.7	1.40e-06	47.2%	4.4%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1k8kA04	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.57	39.0	3.31e-01	71.7%	76.1%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3701364	4001.1.1.0 ↗	a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins	0.59	38.0	2.95e-01	84.9%	30.0%
3410445	627.1.1.4 ↗	alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › PF26202	0.58	40.0	3.07e-01	75.5%	93.6%
4828613	263.1.1.1 ↗	a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF	0.52	37.0	3.20e-01	75.5%	60.5%
4278077	304.158.1.1 ↗	a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Csy2	0.51	34.0	2.25e-01	73.6%	91.9%

D4 medium residues 301-358_382-427

PDB

Domain cluster: rep: rifampicin_resistance_N3L_protein__YP_009046287__Pigeonpox_virus__10264__D308-360_385-415

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03340.20 best	Pox_Rif	89.7	2.20e-25	59.6%	11.2%
PF03340.20	Pox_Rif	80.3	1.60e-22	46.2%	8.7%