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hypothetical_protein_X812_gp12

Euk-Vir

Zamilon_virus

hypothetical_protein_X812_gp12__YP_008859641__Zamilon_virus__1411887

Identity

Accession:
YP_008859641 ↗
Protein ID:
hypothetical_protein_X812_gp12
Kingdom:
euk

Quality

78.0 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Virophaviricetes› Mividavirales› Sputniviroviridae› Sputnikvirus› Zamilon_virus

TaxID: 1411887

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-159
PDB
Domain cluster: rep: IMGVR_UViG_3300050509_000421-3300050509-nmdc-mga0qj67_860_c1_6749_7204__D41-150
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.67 62.0 5.94e-01 100.0% 87.7%
2oivA00 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.60 55.0 5.09e-01 100.0% 86.5%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 48.0 3.54e-01 99.3% 68.3%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 47.0 3.43e-01 100.0% 59.6%
3c5vA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 47.0 3.72e-01 99.3% 80.3%
3d0kB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 3.56e-01 99.3% 75.1%
3h74A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 46.0 3.65e-01 100.0% 77.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1718744 219.1.1.62 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › SidE_DUB 0.73 62.0 5.50e-01 100.0% 64.6%
4804719 219.1.1.68 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › RickCE_cat 0.67 48.0 4.76e-01 81.6% 71.1%
3213464 219.1.1.16 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.64 58.0 4.72e-01 100.0% 70.6%
4267913 219.1.1.20 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_14 0.64 59.0 4.48e-01 100.0% 46.9%
3675660 219.1.1.16 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.63 59.0 4.57e-01 100.0% 68.1%
3659162 219.1.1.16 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.63 58.0 4.91e-01 100.0% 75.5%
1868671 219.1.1.16 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.63 57.0 5.03e-01 100.0% 78.9%
1687172 219.1.1.60 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LupA 0.62 56.0 5.17e-01 99.3% 76.7%
3792944 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 55.0 5.01e-01 100.0% 76.2%
5043208 2006.1.4.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.58 39.0 4.00e-01 90.4% 68.9%
4854856 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 36.0 4.04e-01 80.9% 85.1%
1498221 12.6.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Bac_rhamnosid_C 0.56 33.0 4.15e-01 74.3% 100.0%
3268696 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.55 45.0 4.47e-01 86.0% 94.3%
4612013 3186.1.1.1 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook 0.53 36.0 4.14e-01 86.8% 100.0%
3181542 207.1.1.33 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › DUF6546 0.53 46.0 3.35e-01 96.3% 59.5%
4483981 327.10.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.51 29.0 3.61e-01 73.5% 95.0%
1164102 3535.1.1.1 ↗ a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › CamS 0.50 33.0 3.47e-01 76.5% 72.6%
D2 medium residues 1-23_160-188
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.65 54.0 4.82e-01 98.1% 92.4%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 46.0 4.18e-01 86.5% 90.5%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 40.0 4.18e-01 80.8% 79.2%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.55 39.0 4.25e-01 94.2% 95.1%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.88e-01 92.3% 68.9%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.48e-01 92.3% 52.5%
2de2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 46.0 3.07e-01 96.2% 66.5%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.67e-01 92.3% 65.6%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.63e-01 88.5% 82.9%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 39.0 3.66e-01 84.6% 80.9%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.98e-01 92.3% 75.0%
1ou0A00 3.40.50.10230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase 0.51 37.0 2.55e-01 92.3% 21.6%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 42.0 3.81e-01 88.5% 89.7%
3v53E00 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.51 36.0 3.00e-01 78.8% 42.2%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 3.77e-01 96.2% 73.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963650 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 49.0 5.01e-01 94.2% 86.0%
4088162 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 43.0 2.47e-01 76.9% 11.5%
3922872 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.58 50.0 4.04e-01 94.2% 51.6%
3980686 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.58 40.0 4.14e-01 90.4% 76.0%
3953011 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.57 39.0 3.90e-01 86.5% 69.1%
4204226 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.57 39.0 4.21e-01 90.4% 84.4%
3971395 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.54 40.0 3.55e-01 90.4% 56.0%
3728392 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.52 39.0 3.32e-01 94.2% 46.3%
3954906 378.1.1.23 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.51 42.0 3.02e-01 94.2% 47.7%
3590898 101.1.20.1 ↗ alpha arrays › HTH › HTH › Sigma54 core-binding domain › Sigma54_CBD 0.50 41.0 3.01e-01 94.2% 34.0%