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hypothetical_protein_YMTVg129R

Euk-Vir

Yaba_monkey_tumor_virus

hypothetical_protein_YMTVg129R__NP_938385__Yaba_monkey_tumor_virus__38804

Identity

Accession:
NP_938385 ↗
Protein ID:
hypothetical_protein_YMTVg129R
Kingdom:
euk

Quality

83.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Yatapoxvirus› Yaba_monkey_tumor_virus

TaxID: 38804

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-59
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.72 50.0 4.75e-01 72.9% 98.6%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.71 60.0 4.69e-01 96.6% 63.8%
3rf7A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.71 60.0 4.42e-01 100.0% 36.6%
2y4tA02 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.70 49.0 5.22e-01 74.6% 90.4%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 50.0 4.69e-01 74.6% 80.3%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.70 61.0 5.72e-01 100.0% 90.5%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.68 59.0 5.11e-01 100.0% 73.7%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.68 57.0 4.82e-01 100.0% 69.8%
6q9jB02 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.67 54.0 4.88e-01 96.6% 65.9%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.66 52.0 3.77e-01 89.8% 63.4%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.66 57.0 5.31e-01 100.0% 86.7%
1cpyA02 1.10.287.410 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 49.0 4.64e-01 83.1% 91.7%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 45.0 4.23e-01 74.6% 57.9%
1r8iA00 1.20.58.430 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Type IV secretion system, VirB5-domain 0.64 55.0 3.94e-01 100.0% 82.9%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.63 46.0 4.26e-01 98.3% 59.3%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 54.0 4.67e-01 100.0% 88.4%
4e40A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.62 53.0 3.59e-01 100.0% 77.6%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.62 53.0 3.97e-01 100.0% 60.1%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.61 46.0 4.02e-01 81.4% 60.0%
4bj1A01 1.20.120.1650 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 45.0 3.73e-01 89.8% 91.2%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3503770 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.79 70.0 5.26e-01 100.0% 55.9%
4628667 605.4.1.13 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PANTS-like 0.78 64.0 6.23e-01 88.1% 100.0%
3689697 605.4.1.8 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › MARVEL 0.74 64.0 5.62e-01 100.0% 95.6%
4569 109.4.1.290 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PrgX_C_TPR 0.72 57.0 3.76e-01 84.7% 30.3%
59853 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 57.0 3.74e-01 84.7% 30.3%
2582657 601.2.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › 7tm_1 0.68 59.0 4.74e-01 100.0% 75.8%
3716307 3890.1.1.1 ↗ alpha bundles › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Bax1-I 0.68 48.0 3.17e-01 74.6% 96.2%
3600710 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 57.0 3.76e-01 96.6% 25.3%
3330282 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.66 58.0 4.94e-01 100.0% 79.0%
3592841 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.65 53.0 5.12e-01 96.6% 91.4%
3222373 605.4.1.18 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PF29357 0.64 55.0 4.94e-01 100.0% 89.4%
5028219 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.63 55.0 4.83e-01 100.0% 84.4%
3286065 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.63 54.0 5.19e-01 98.3% 90.0%
3942983 101.1.4.8 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CP76 0.63 43.0 3.29e-01 72.9% 32.0%
4935665 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.63 53.0 4.85e-01 98.3% 91.3%
4938066 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.63 55.0 5.34e-01 98.3% 98.5%
5031855 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.62 54.0 4.91e-01 100.0% 88.7%
5014265 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.62 53.0 4.79e-01 100.0% 90.6%
5047712 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.62 54.0 5.06e-01 100.0% 94.7%
4959128 632.18.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.60 50.0 4.71e-01 98.3% 88.0%
3476372 3687.1.1.0 ↗ alpha bundles › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain 0.58 46.0 3.59e-01 96.6% 48.4%
3607124 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.53 44.0 3.80e-01 93.2% 65.3%
D2 medium residues 60-138
PDB
Domain cluster: rep: hypothetical_protein_DpV83gp138__YP_227514__Deerpox_virus_W-848-83__305674__D64-144