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hypothetical_protein

Euk-Vir

Peanut_chlorotic_streak_virus

hypothetical_protein__NP_042512__Peanut_chlorotic_streak_virus__35593

Identity

Accession:
NP_042512 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

65.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 111-208
PDB
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aj5A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.67 48.0 4.03e-01 76.5% 49.1%
1u7kA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.63 56.0 5.10e-01 99.0% 85.5%
2lwdA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.61 42.0 4.30e-01 91.8% 74.0%
1ga3A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 47.0 4.54e-01 89.8% 96.5%
1dqeA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.58 47.0 4.28e-01 91.8% 92.7%
3fgaB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 40.0 2.67e-01 74.5% 43.9%
7dwqL01 1.20.1240.10 Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI 0.55 45.0 4.10e-01 93.9% 68.0%
3geeA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.54 44.0 3.79e-01 90.8% 71.4%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.53 43.0 4.04e-01 87.8% 99.2%
2f6sA00 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.53 41.0 3.45e-01 95.9% 45.6%
1hy5B00 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.53 44.0 4.12e-01 91.8% 98.3%
4kx7A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.53 41.0 2.85e-01 82.7% 64.1%
4i5jA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 44.0 3.92e-01 99.0% 88.5%
4ebjA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 44.0 4.03e-01 93.9% 80.0%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 41.0 3.37e-01 88.8% 95.5%
4fzxC00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 39.0 3.33e-01 80.6% 93.3%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.51 45.0 4.12e-01 98.0% 89.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3173030 170.1.1.7 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Ty3_capsid 0.80 59.0 6.65e-01 94.9% 100.0%
3173011 396.1.1.12 few secondary structure elements › CCHC-type 1 zinc finger › Retrovirus zinc finger-related domains › Retrovirus zinc finger-related domains › Ty3_capsid 0.79 58.0 6.58e-01 94.9% 100.0%
3927452 170.2.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.76 55.0 6.18e-01 98.0% 98.7%
3937208 170.2.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.74 54.0 5.98e-01 98.0% 98.7%
3306483 170.1.1.15 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 0.73 54.0 5.50e-01 96.9% 80.0%
3372591 170.1.1.15 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 0.73 55.0 5.42e-01 96.9% 74.3%
3812214 170.1.1.15 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 0.73 53.0 5.57e-01 96.9% 83.3%
3356582 170.1.1.15 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 0.71 54.0 5.39e-01 96.9% 78.0%
4013173 170.2.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.71 57.0 6.06e-01 96.9% 96.5%
3520427 170.1.1.15 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 0.71 53.0 5.41e-01 96.9% 81.1%
3366265 170.1.1.15 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 0.71 54.0 5.17e-01 96.9% 70.9%
3810859 170.1.1.15 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 0.71 52.0 5.29e-01 96.9% 78.9%
3728294 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.70 53.0 5.41e-01 96.9% 81.1%
3196986 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.67 48.0 5.13e-01 84.7% 87.1%
3426111 170.2.1.30 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4219 0.65 45.0 5.15e-01 95.9% 100.0%
3244401 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.63 40.0 3.82e-01 91.8% 53.9%
3795102 108.1.1.21 alpha arrays › EF-hand › EF-hand-related › EF-hand › SPARC_Ca_bdg 0.63 49.0 3.80e-01 81.6% 55.7%
4001204 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.62 46.0 4.71e-01 99.0% 82.1%
4975208 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.61 45.0 4.82e-01 80.6% 90.6%
3366786 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 42.0 2.59e-01 73.5% 34.0%
3718443 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.58 44.0 4.51e-01 95.9% 84.2%
3203655 601.16.1.0 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase 0.56 51.0 4.54e-01 100.0% 94.3%
3608299 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.56 40.0 4.32e-01 84.7% 92.5%
54721 601.26.1.0 alpha bundles › Four-helical up-and-down bundle › YppE-like › YppE-like 0.53 43.0 4.04e-01 87.8% 99.2%
4044396 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.53 43.0 3.39e-01 86.7% 93.7%
5016092 3745.1.1.1 alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.53 45.0 3.22e-01 96.9% 93.8%
3939088 5001.1.1.31 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › GPR180-TMEM145_TM 0.52 43.0 3.18e-01 90.8% 72.6%
3437306 101.1.2.79 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.51 32.0 2.97e-01 80.6% 46.9%
3589770 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.51 43.0 3.16e-01 89.8% 97.6%
D2 high residues 220-320
PDB
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.67 30.0 3.34e-01 75.2% 50.6%
3f1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.66 40.0 3.54e-01 88.1% 40.9%
2ca5A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 39.0 4.69e-01 85.1% 96.8%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.64 46.0 4.90e-01 75.2% 100.0%
4p9tA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.63 47.0 4.49e-01 79.2% 96.7%
1t5oA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.62 52.0 4.67e-01 91.1% 80.1%
1wpbB02 1.10.3190.10 Mainly Alpha › Orthogonal Bundle › yfbu gene product, domain 2 › yfbu gene product, domain 2 0.60 28.0 2.79e-01 74.3% 38.4%
6xpdA01 1.20.1510.10 Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain 0.59 47.0 3.77e-01 87.1% 63.4%
4c0qB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 44.0 2.68e-01 84.2% 11.3%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.57 42.0 4.24e-01 77.2% 89.9%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 49.0 4.56e-01 98.0% 77.3%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 40.0 4.14e-01 76.2% 100.0%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.55 35.0 3.51e-01 88.1% 61.3%
2jx0A00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 41.0 3.83e-01 82.2% 87.8%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 47.0 4.57e-01 96.0% 99.1%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 47.0 4.69e-01 98.0% 100.0%
1a22A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 42.0 3.47e-01 83.2% 87.2%
4hzuS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.53 42.0 3.64e-01 86.1% 82.9%
5tl8A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 43.0 2.83e-01 89.1% 27.3%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 41.0 4.24e-01 83.2% 92.5%
3rbtA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 36.0 3.51e-01 73.3% 83.8%
1n83A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 46.0 3.47e-01 100.0% 91.2%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.51 40.0 4.00e-01 93.1% 81.5%
6me6B02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 43.0 3.16e-01 94.1% 48.2%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 35.0 2.69e-01 73.3% 74.1%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 43.0 4.00e-01 98.0% 74.6%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3353748 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.88 83.0 7.93e-01 100.0% 93.0%
3816297 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.82 55.0 6.52e-01 78.2% 100.0%
3168455 170.1.1.7 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Ty3_capsid 0.80 61.0 6.79e-01 84.2% 100.0%
3513854 170.1.1.23 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF30931 0.79 57.0 6.50e-01 82.2% 100.0%
3817236 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.78 59.0 6.54e-01 83.2% 100.0%
3178198 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.76 59.0 6.40e-01 90.1% 98.8%
3177791 170.1.1.37 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF29703 0.74 58.0 5.96e-01 83.2% 100.0%
3926116 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.73 61.0 6.31e-01 91.1% 100.0%
3941254 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.71 59.0 6.13e-01 91.1% 100.0%
3631497 170.2.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.70 54.0 5.86e-01 83.2% 98.8%
3630744 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.69 55.0 5.89e-01 85.1% 100.0%
3937527 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.68 57.0 5.84e-01 90.1% 98.9%
3216085 170.2.1.29 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF7083 0.68 54.0 5.72e-01 85.1% 100.0%
4625331 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.67 55.0 4.28e-01 87.1% 86.7%
4614029 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.67 54.0 4.39e-01 87.1% 90.0%
3879266 170.2.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.65 50.0 5.28e-01 82.2% 97.8%
3224005 2002.1.1.56 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus 0.62 51.0 3.37e-01 89.1% 70.2%
3233339 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.61 49.0 3.87e-01 86.1% 62.4%
3838379 601.53.1.0 alpha bundles › Four-helical up-and-down bundle › Flagellin glycosyltransferase Maf helical bundle domain › Flagellin glycosyltransferase Maf helical bundle domain 0.59 46.0 4.49e-01 84.2% 84.5%
3936005 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.56 40.0 4.02e-01 85.1% 72.4%
3373206 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.56 45.0 3.25e-01 88.1% 68.5%
5022737 1030.1.1.1 alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A 0.55 41.0 3.52e-01 80.2% 58.6%
3999040 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.53 48.0 4.05e-01 100.0% 86.5%
3782629 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 2.77e-01 98.0% 49.5%
3808386 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 46.0 3.58e-01 100.0% 46.4%
3732153 3567.1.1.119 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PHO4 0.51 42.0 2.95e-01 92.1% 86.8%
3487229 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 40.0 3.83e-01 83.2% 95.7%