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hypothetical_protein

Euk-Vir

Strawberry_vein_banding_virus

hypothetical_protein__NP_043932__Strawberry_vein_banding_virus__47903

Identity

Accession:
NP_043932 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

68.4 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Caulimovirus› Strawberry_vein_banding_virus

TaxID: 47903

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 115-200
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 43.0 4.54e-01 100.0% 69.3%
2ncoA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.65 54.0 5.12e-01 91.9% 87.3%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 38.0 3.70e-01 96.5% 49.5%
1ij5A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 47.0 4.16e-01 83.7% 51.9%
3sibA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 55.0 4.27e-01 98.8% 82.3%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.62 53.0 5.28e-01 95.3% 94.3%
1rypD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.62 47.0 3.39e-01 80.2% 83.8%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.60 51.0 4.26e-01 95.3% 68.0%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.59 41.0 3.56e-01 73.3% 91.5%
2k2aA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 43.0 4.59e-01 84.9% 97.1%
1hqvA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 49.0 3.98e-01 98.8% 84.8%
1vkuA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.57 46.0 4.64e-01 89.5% 100.0%
4n5xA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 44.0 4.50e-01 84.9% 91.3%
3veaA01 1.20.1270.380 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › MatP, N-terminal domain 0.57 35.0 3.46e-01 90.7% 58.4%
3cz1A00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 45.0 4.12e-01 88.4% 68.4%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 4.07e-01 74.4% 92.9%
4pt1B00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 49.0 4.29e-01 97.7% 85.9%
1c07A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 43.0 4.24e-01 88.4% 78.9%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 37.0 4.16e-01 95.3% 91.0%
2bl0C01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 41.0 4.30e-01 90.7% 96.0%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.54 38.0 4.20e-01 94.2% 92.6%
1hy5B00 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.53 45.0 4.06e-01 96.5% 94.2%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 42.0 3.89e-01 88.4% 89.2%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.53 33.0 3.60e-01 73.3% 82.8%
3tevB00 3.20.20.300 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain 0.52 39.0 2.71e-01 81.4% 75.2%
2liuA01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.52 44.0 4.50e-01 97.7% 100.0%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.90e-01 79.1% 98.8%
2r4gA01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.51 43.0 3.42e-01 95.3% 66.7%
2e6mA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 42.0 3.35e-01 91.9% 82.8%
1n1fA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 42.0 3.61e-01 96.5% 93.5%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.50 39.0 3.69e-01 95.3% 70.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3853328 170.2.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 0.80 64.0 6.85e-01 97.7% 98.7%
3878573 170.2.1.12 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Retrotrans_gag 0.79 65.0 6.74e-01 98.8% 93.8%
3205454 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.79 67.0 6.80e-01 98.8% 91.8%
3906319 170.2.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 0.79 64.0 6.68e-01 98.8% 93.8%
3888098 170.1.1.32 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF4939 0.78 64.0 6.63e-01 98.8% 93.8%
3841733 170.2.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 0.78 63.0 6.53e-01 97.7% 92.5%
3300490 170.2.1.32 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › PF28884 0.77 68.0 6.89e-01 100.0% 96.5%
3532229 170.2.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 0.77 63.0 6.55e-01 100.0% 95.0%
3927258 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.75 59.0 6.06e-01 100.0% 90.0%
3566330 170.2.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 0.75 58.0 6.19e-01 95.3% 96.0%
4013173 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.74 64.0 6.47e-01 98.8% 94.1%
3933535 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.73 58.0 5.58e-01 98.8% 74.0%
3630744 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.73 61.0 6.15e-01 100.0% 90.6%
3631497 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.73 61.0 6.19e-01 100.0% 91.8%
3568444 304.9.1.37 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PNMA 0.72 61.0 6.36e-01 100.0% 98.8%
3798911 170.2.1.8 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF1759 0.71 55.0 5.66e-01 100.0% 87.5%
3199066 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.71 57.0 6.10e-01 89.5% 100.0%
3639813 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.70 57.0 5.93e-01 100.0% 96.2%
3600055 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.69 40.0 3.52e-01 94.2% 40.0%
3504090 108.1.1.39 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › P2R3B_EF-hand 0.68 55.0 5.59e-01 95.3% 89.4%
3927654 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.67 51.0 5.58e-01 96.5% 98.6%
3936342 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.67 52.0 5.48e-01 98.8% 96.0%
3962893 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.66 40.0 3.86e-01 95.3% 53.7%
3490900 108.1.1.132 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7, EF-hand_8 0.66 55.0 4.37e-01 93.0% 84.4%
5044025 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.66 40.0 4.10e-01 95.3% 62.4%
4223385 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.65 40.0 3.82e-01 95.3% 53.0%
4145524 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.63 37.0 4.13e-01 82.6% 76.9%
3976728 3355.1.1.11 ↗ alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › GntP_permease 0.62 50.0 3.18e-01 87.2% 84.8%
1141813 159.1.2.2 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG 0.61 39.0 3.78e-01 98.8% 58.5%
3819443 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.61 46.0 4.54e-01 81.4% 80.0%
3421477 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.59 46.0 4.72e-01 84.9% 91.3%
3254554 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.58 44.0 4.60e-01 86.0% 88.7%
4041102 3960.1.1.1 ↗ alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › AadA_C 0.58 50.0 4.69e-01 96.5% 99.0%
3275054 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.57 43.0 4.49e-01 81.4% 96.0%
3167236 148.1.3.31 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM4_WHD 0.57 41.0 4.15e-01 75.6% 89.4%
5048178 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 4.23e-01 75.6% 86.3%
3484485 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.56 44.0 4.66e-01 87.2% 100.0%
3668907 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.56 43.0 4.00e-01 86.0% 66.4%
3238699 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.55 41.0 4.34e-01 83.7% 93.3%
3658222 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.54 42.0 4.30e-01 89.5% 91.8%
4545815 108.1.1.4 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 42.0 4.25e-01 89.5% 87.1%
4653062 604.4.1.0 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.53 39.0 3.60e-01 76.7% 78.2%
5044288 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.94e-01 77.9% 88.7%
3688425 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.51 38.0 3.24e-01 76.7% 72.9%
D2 medium residues 207-311
PDB
Domain cluster: rep: coat_protein_movement_protein__YP_004347414__Sweet_potato_collusive_virus__930168__D560-659
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22909.2 best Caulimovir_coat_dom 33.0 9.40e-08 95.2% 85.8%