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hypothetical_protein

Euk-Vir

Adoxophyes_orana_nucleopolyhedrovirus

hypothetical_protein__YP_002300554__Adoxophyes_orana_nucleopolyhedrovirus__542343

Identity

Accession:
YP_002300554 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

54.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Adoxophyes_orana_nucleopolyhedrovirus

TaxID: 542343

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-67
PDB
Domain cluster: rep: ChaB2__YP_010087102__Spodoptera_eridania_nucleopolyhedrovirus__2315721__D11-61
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06150.18 best ChaB 40.0 6.70e-10 80.6% 91.7%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.81 67.0 6.45e-01 89.6% 100.0%
2xd3A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.68 47.0 3.40e-01 73.1% 72.2%
2imhA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.67 48.0 3.36e-01 76.1% 66.7%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 47.0 4.37e-01 76.1% 76.2%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.65 51.0 4.90e-01 92.5% 73.4%
1ufhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 44.0 3.40e-01 80.6% 30.3%
1e94A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.64 51.0 3.73e-01 85.1% 86.8%
3ry7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.63 57.0 3.68e-01 100.0% 25.1%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 45.0 4.31e-01 76.1% 81.5%
5ysqB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.63 53.0 3.40e-01 89.6% 29.6%
2g8lA02 1.10.285.20 Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 0.62 42.0 4.31e-01 71.6% 75.4%
2yi9A05 1.20.1270.270 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain 0.62 47.0 4.51e-01 85.1% 71.4%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.62 46.0 4.45e-01 82.1% 88.2%
5cegD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.62 44.0 3.89e-01 76.1% 86.1%
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 49.0 4.34e-01 89.6% 65.0%
4e69A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 51.0 3.27e-01 91.0% 23.2%
3t38A01 1.10.8.1060 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain 0.61 52.0 5.16e-01 98.5% 98.6%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 51.0 3.43e-01 100.0% 37.6%
3vouB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 46.0 3.67e-01 83.6% 54.4%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 43.0 3.83e-01 77.6% 58.2%
3r64A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.59 42.0 2.80e-01 83.6% 17.9%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 47.0 4.04e-01 92.5% 54.9%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.58 41.0 3.82e-01 82.1% 58.6%
1vryA00 6.10.250.2810 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 38.0 3.92e-01 70.1% 73.8%
3h49B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 46.0 3.00e-01 88.1% 21.4%
7wu8B01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.57 40.0 3.83e-01 80.6% 63.3%
1w53A00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.55 36.0 3.40e-01 74.6% 52.4%
3gt5A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 44.0 2.86e-01 97.0% 93.1%
3louA02 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.54 45.0 3.26e-01 92.5% 41.1%
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.54 37.0 3.39e-01 71.6% 65.9%
1bcrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 39.0 2.76e-01 82.1% 24.0%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.54 36.0 3.63e-01 70.1% 97.1%
2gz6A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 39.0 2.50e-01 80.6% 32.8%
3rpmA02 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.53 45.0 4.20e-01 98.5% 81.2%
2el7A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.53 40.0 3.68e-01 98.5% 61.7%
3j27A05 1.20.1280.260 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 33.0 2.98e-01 73.1% 42.0%
4a15A04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.77e-01 76.1% 91.1%
8jpdG01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.52 40.0 3.27e-01 89.6% 89.7%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.51 38.0 3.76e-01 82.1% 77.5%
1m4rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.50 39.0 3.21e-01 89.6% 79.4%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4172097 4084.1.1.1 ↗ alpha bundles › ChaB-like › ChaB-like › ChaB-like › ChaB 0.85 66.0 7.01e-01 82.1% 93.3%
3575 4084.1.1.1 ↗ alpha bundles › ChaB-like › ChaB-like › ChaB-like › ChaB 0.81 67.0 6.45e-01 89.6% 100.0%
5018170 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.75 55.0 4.18e-01 83.6% 33.5%
3979958 3009.1.1.0 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.74 56.0 5.12e-01 82.1% 66.3%
4453525 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.70 48.0 4.94e-01 73.1% 80.0%
3497137 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.67 54.0 3.47e-01 86.6% 41.7%
3879266 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.66 53.0 4.80e-01 88.1% 98.9%
3593380 210.1.1.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.66 52.0 3.70e-01 85.1% 80.0%
3215052 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.64 41.0 3.81e-01 73.1% 50.6%
1719256 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.64 52.0 3.75e-01 89.6% 36.2%
3406945 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.64 46.0 4.52e-01 86.6% 69.3%
4128137 103.15.1.3 ↗ alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23, MRP-S25 0.64 55.0 4.35e-01 100.0% 46.6%
3846955 198.1.1.10 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.63 43.0 4.06e-01 80.6% 57.5%
3977168 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 43.0 4.22e-01 71.6% 66.7%
4434184 1023.1.1.1 ↗ beta barrels › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › ZapC_N 0.63 52.0 4.66e-01 89.6% 100.0%
3923696 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.62 42.0 3.87e-01 80.6% 53.3%
4191254 1023.1.1.1 ↗ beta barrels › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › ZapC_N 0.62 51.0 4.62e-01 89.6% 97.8%
3729602 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.61 47.0 4.17e-01 82.1% 71.6%
3503552 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.61 48.0 3.82e-01 86.6% 49.6%
4928675 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 44.0 4.31e-01 88.1% 70.7%
3438235 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.61 43.0 4.27e-01 76.1% 71.4%
4033271 4125.1.1.0 ↗ alpha superhelices › BH3980-like › BH3980-like › BH3980-like 0.61 45.0 4.10e-01 91.0% 57.0%
4630325 509.1.1.10 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 0.61 42.0 4.04e-01 80.6% 64.0%
4261739 3068.2.1.1 ↗ a+b complex topology › Flagellar protein FlgA N-terminal domain-like › RNase J C-terminal domain › RNase J C-terminal domain › RNase_J_C 0.61 49.0 4.24e-01 91.0% 74.5%
2773715 4266.1.1.4 ↗ alpha bundles › Hyaluronidase domain-like › Hyaluronidase post-catalytic domain-like › Hyaluronidase post-catalytic domain-like › Glyco_hydro_84_hel 0.60 42.0 3.30e-01 73.1% 36.7%
3394326 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.59 51.0 3.22e-01 91.0% 35.2%
4567161 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 43.0 3.26e-01 80.6% 81.1%
3552352 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.59 41.0 3.80e-01 80.6% 56.5%
3248407 568.1.1.0 ↗ few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related 0.59 43.0 4.43e-01 79.1% 98.3%
4370713 131.1.1.4 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc 0.59 43.0 2.78e-01 83.6% 21.5%
3627539 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 44.0 4.02e-01 88.1% 61.1%
4941372 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.58 41.0 3.87e-01 76.1% 83.5%
4978574 230.1.1.5 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.57 45.0 3.36e-01 85.1% 46.1%
3781161 4099.1.1.1 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.57 45.0 3.62e-01 88.1% 51.1%
4198250 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 45.0 4.51e-01 92.5% 87.1%
4074190 633.13.1.1 ↗ alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB 0.55 47.0 3.55e-01 97.0% 50.0%
3926417 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.55 45.0 3.49e-01 92.5% 81.9%
3175241 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.55 44.0 3.36e-01 94.0% 82.2%
4021593 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 31.0 2.78e-01 98.5% 36.8%
3596081 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 41.0 3.69e-01 86.6% 87.1%
4886450 511.1.1.1 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.53 45.0 4.33e-01 98.5% 85.0%
4372593 2002.1.1.15 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA 0.53 41.0 2.86e-01 92.5% 89.8%
3637957 109.2.1.33 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_N 0.51 39.0 2.68e-01 89.6% 90.8%
3571301 386.1.1.112 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2HC_2 0.51 43.0 3.84e-01 100.0% 94.0%