←Back to structures

hypothetical_protein

Euk-Vir

Adoxophyes_orana_nucleopolyhedrovirus

hypothetical_protein__YP_002300555__Adoxophyes_orana_nucleopolyhedrovirus__542343

Identity

Accession:
YP_002300555 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

68.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Adoxophyes_orana_nucleopolyhedrovirus

TaxID: 542343

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-72
PDB
Domain cluster: rep: hypothetical_protein_KM622_gp103__YP_010086521__Spodoptera_exempta_nucleopolyhedrovirus__1242863__D25-85
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10891.14 best DUF2719 30.1 4.70e-07 96.9% 61.7%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3siqA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.62 50.0 4.37e-01 90.8% 77.7%
1i3oF00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.62 48.0 4.29e-01 86.2% 59.1%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 37.0 4.35e-01 76.9% 100.0%
2poiA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.61 48.0 4.54e-01 86.2% 82.1%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 47.0 4.77e-01 90.8% 90.9%
1tvzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 47.0 3.70e-01 95.4% 76.2%
3m1yC01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 44.0 3.43e-01 89.2% 89.9%
3s8iA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 42.0 3.53e-01 87.7% 97.6%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 38.0 3.44e-01 76.9% 59.6%
4nwyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 37.0 3.07e-01 73.8% 89.8%
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.53 33.0 3.47e-01 92.3% 68.9%
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 38.0 3.66e-01 76.9% 89.2%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 39.0 3.41e-01 84.6% 100.0%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 40.0 3.15e-01 89.2% 87.8%
3iylW04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 2.96e-01 93.8% 65.2%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 2.91e-01 92.3% 63.9%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.51 30.0 3.06e-01 95.4% 59.7%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 35.0 2.95e-01 76.9% 79.4%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028249 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.73 41.0 4.51e-01 75.4% 68.5%
3317170 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.68 43.0 4.96e-01 80.0% 93.3%
5052723 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 58.0 5.40e-01 93.8% 98.8%
3882068 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.68 48.0 5.29e-01 83.1% 96.0%
3260511 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.67 46.0 4.99e-01 80.0% 85.5%
3397452 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.67 49.0 5.10e-01 84.6% 85.0%
3794324 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 47.0 4.59e-01 84.6% 70.0%
3628498 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.65 46.0 4.54e-01 84.6% 70.0%
3503411 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 43.0 4.86e-01 81.5% 97.8%
3537747 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.64 44.0 4.68e-01 78.5% 83.6%
3750942 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 40.0 4.43e-01 78.5% 82.0%
3925231 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 46.0 4.81e-01 87.7% 85.0%
3598119 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.63 45.0 4.41e-01 73.8% 68.6%
3557224 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.63 50.0 4.59e-01 86.2% 84.7%
3874336 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.63 48.0 4.44e-01 83.1% 80.0%
3935829 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.63 46.0 4.75e-01 84.6% 86.4%
4499664 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.63 49.0 4.72e-01 86.2% 85.3%
3179779 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.62 43.0 3.87e-01 72.3% 54.4%
3742070 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.61 49.0 4.45e-01 89.2% 84.4%
3931217 502.1.1.0 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain 0.61 48.0 4.81e-01 90.8% 86.2%
3187663 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.61 48.0 4.15e-01 87.7% 91.4%
3865601 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.61 47.0 4.35e-01 86.2% 75.3%
3333592 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 42.0 2.99e-01 73.8% 41.0%
3312445 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.60 39.0 3.09e-01 83.1% 33.1%
3563732 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.60 43.0 4.65e-01 81.5% 90.9%
3362766 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.60 43.0 4.67e-01 75.4% 98.0%
3928378 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 46.0 4.16e-01 92.3% 62.4%
5051008 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.59 43.0 3.17e-01 76.9% 40.6%
4959885 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.59 41.0 3.82e-01 73.8% 92.9%
3480610 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 42.0 4.16e-01 76.9% 92.9%
3176264 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.58 41.0 4.50e-01 83.1% 98.0%
3577308 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.58 40.0 4.32e-01 81.5% 87.3%
3402054 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.57 44.0 4.55e-01 84.6% 95.0%
3825571 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 45.0 4.64e-01 87.7% 96.7%
3906050 386.1.1.64 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_12 0.56 47.0 4.73e-01 98.5% 92.5%
3566795 386.1.1.64 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_12 0.56 47.0 4.69e-01 98.5% 90.0%
3788129 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.56 39.0 3.76e-01 73.8% 80.0%
3496457 304.9.1.78 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28978 0.55 46.0 3.88e-01 93.8% 89.1%
3488329 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 46.0 3.69e-01 93.8% 93.8%
4001939 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.55 43.0 4.29e-01 89.2% 82.9%
3744636 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.54 39.0 3.51e-01 76.9% 66.7%
3936608 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.68e-01 93.8% 87.3%
3603405 4043.1.1.2 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 0.51 41.0 3.24e-01 87.7% 48.9%
4026585 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 40.0 2.85e-01 90.8% 80.9%