←Back to structures

hypothetical_protein

Euk-Vir

Adoxophyes_orana_nucleopolyhedrovirus

hypothetical_protein__YP_002300559__Adoxophyes_orana_nucleopolyhedrovirus__542343

Identity

Accession:
YP_002300559 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

83.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Adoxophyes_orana_nucleopolyhedrovirus

TaxID: 542343

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-74
PDB
Domain cluster: rep: ORF108__YP_010087109__Spodoptera_eridania_nucleopolyhedrovirus__2315721__D12-66
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 46.0 4.94e-01 70.2% 70.8%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 44.0 4.65e-01 73.7% 72.5%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 42.0 4.16e-01 77.2% 64.4%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 42.0 4.16e-01 78.9% 64.4%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.41e-01 80.7% 73.2%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 40.0 4.16e-01 70.2% 69.8%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 40.0 4.01e-01 70.2% 63.8%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 42.0 4.24e-01 71.9% 96.6%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 42.0 3.85e-01 80.7% 51.9%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 41.0 3.71e-01 70.2% 87.3%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 45.0 4.35e-01 78.9% 95.3%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 40.0 4.00e-01 71.9% 63.9%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 43.0 3.89e-01 87.7% 53.1%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 43.0 4.19e-01 75.4% 87.1%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 43.0 4.20e-01 77.2% 96.9%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 43.0 2.72e-01 77.2% 30.7%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.59 41.0 3.44e-01 73.7% 90.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.59 41.0 4.33e-01 73.7% 84.6%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 48.0 2.89e-01 91.2% 70.8%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 42.0 3.89e-01 84.2% 58.7%
2wfwA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 4.16e-01 77.2% 100.0%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 46.0 3.88e-01 89.5% 73.0%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 3.73e-01 80.7% 62.9%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 40.0 2.52e-01 73.7% 35.8%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.57 44.0 3.91e-01 86.0% 95.3%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 3.63e-01 82.5% 51.0%
3ww7A00 2.40.10.500 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 39.0 3.55e-01 73.7% 95.1%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.57 40.0 2.85e-01 75.4% 27.2%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 2.82e-01 93.0% 38.5%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.56 45.0 2.95e-01 94.7% 92.4%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 43.0 4.04e-01 86.0% 80.6%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 38.0 2.45e-01 73.7% 24.6%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.83e-01 91.2% 72.8%
3lppA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.55 38.0 2.63e-01 75.4% 38.0%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 44.0 2.78e-01 93.0% 94.4%
3rgfA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 36.0 3.17e-01 73.7% 77.1%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 36.0 3.84e-01 78.9% 82.0%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 36.0 3.70e-01 73.7% 80.7%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 37.0 2.41e-01 77.2% 37.7%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.53 37.0 3.35e-01 77.2% 94.0%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 36.0 3.11e-01 75.4% 53.3%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.73e-01 89.5% 90.0%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 37.0 3.63e-01 78.9% 90.9%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 38.0 3.23e-01 82.5% 73.8%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 35.0 2.32e-01 77.2% 36.8%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 39.0 3.11e-01 93.0% 83.8%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3328618 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.75 49.0 5.68e-01 77.2% 95.0%
3921563 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 49.0 4.42e-01 86.0% 53.8%
3617175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 4.86e-01 75.4% 76.4%
3227946 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.66 46.0 4.41e-01 71.9% 96.9%
3929758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.76e-01 71.9% 74.5%
3251887 2.1.1.137 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF6748 0.64 51.0 3.68e-01 91.2% 51.1%
3941320 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.62 47.0 4.30e-01 80.7% 82.7%
3603358 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 46.0 4.60e-01 80.7% 100.0%
3514906 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 52.0 3.58e-01 91.2% 74.2%
3256498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.58e-01 77.2% 85.5%
3849311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 43.0 4.26e-01 73.7% 88.3%
3240192 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 45.0 4.11e-01 78.9% 74.7%
3877938 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 49.0 4.26e-01 89.5% 85.6%
4259370 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 41.0 4.22e-01 70.2% 80.0%
3609031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 46.0 3.92e-01 84.2% 97.0%
3265052 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 43.0 2.88e-01 75.4% 50.2%
4950506 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 43.0 3.57e-01 75.4% 57.1%
4957484 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 46.0 3.84e-01 82.5% 61.0%
3186255 223.1.1.21 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.61 40.0 2.57e-01 70.2% 30.6%
3507664 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 43.0 4.24e-01 75.4% 90.0%
3501699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.36e-01 89.5% 93.8%
3592541 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.02e-01 80.7% 68.8%
3715537 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.60 45.0 3.26e-01 82.5% 27.8%
3846212 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 44.0 3.97e-01 78.9% 72.5%
3383283 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.60 45.0 4.31e-01 80.7% 96.9%
4985312 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.60 42.0 3.38e-01 75.4% 51.7%
4868007 5.1.2.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL 0.60 41.0 2.67e-01 71.9% 31.1%
3619598 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 39.0 3.43e-01 73.7% 42.4%
4269256 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.60 43.0 4.30e-01 80.7% 73.3%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.59 44.0 4.24e-01 80.7% 75.4%
4932460 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.59 42.0 4.11e-01 75.4% 96.8%
3178364 319.1.1.19 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 0.59 40.0 3.43e-01 73.7% 47.6%
4024012 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 40.0 2.86e-01 73.7% 46.5%
279006 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 40.0 3.85e-01 86.0% 59.4%
3671396 4.1.1.316 ↗ beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.58 45.0 4.18e-01 86.0% 75.3%
3722095 223.1.1.21 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.58 40.0 2.55e-01 73.7% 38.1%
3391556 4.1.1.384 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_krimper_1st 0.58 47.0 3.91e-01 91.2% 62.9%
3274551 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 43.0 3.94e-01 78.9% 70.7%
4931925 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 3.40e-01 75.4% 94.3%
3275623 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 41.0 3.62e-01 77.2% 63.5%
3420395 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 48.0 3.03e-01 98.2% 95.9%
5064802 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 38.0 3.35e-01 71.9% 95.6%
3979360 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.56 39.0 4.08e-01 73.7% 86.0%
5008404 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.55 39.0 4.24e-01 75.4% 100.0%
3407820 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 43.0 3.87e-01 89.5% 84.7%
3407827 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 43.0 3.85e-01 89.5% 83.5%
4618205 604.1.1.150 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.55 43.0 3.53e-01 93.0% 44.2%
3740759 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.54 36.0 3.63e-01 73.7% 68.3%
3395948 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.54 41.0 4.18e-01 82.5% 85.5%
4978136 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 2.62e-01 98.2% 94.9%
4485519 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 38.0 3.17e-01 78.9% 95.5%
3507112 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.53 35.0 3.68e-01 70.2% 78.0%
3407853 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 41.0 3.60e-01 87.7% 78.9%
3212280 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 43.0 2.65e-01 96.5% 86.4%
4960549 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 34.0 3.61e-01 71.9% 94.0%