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hypothetical_protein

Euk-Vir

Adoxophyes_orana_nucleopolyhedrovirus

hypothetical_protein__YP_002300574__Adoxophyes_orana_nucleopolyhedrovirus__542343

Identity

Accession:
YP_002300574 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

78.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-72
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06648.18 best AcMNPV_Ac75 51.7 1.50e-13 91.7% 53.7%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.72 54.0 4.58e-01 79.2% 87.5%
3vuqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 53.0 3.92e-01 100.0% 38.1%
2o36A01 1.20.1050.40 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 0.57 48.0 3.95e-01 91.7% 57.8%
3caxA01 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.57 45.0 3.25e-01 87.5% 45.6%
3rqtA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.55 48.0 3.51e-01 100.0% 76.5%
1nlxA00 1.20.120.320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen 0.55 45.0 4.06e-01 93.1% 88.5%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 48.0 3.68e-01 100.0% 89.4%
5x56B00 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.54 46.0 4.14e-01 97.2% 86.7%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 43.0 3.95e-01 100.0% 65.3%
2q14B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 43.0 3.02e-01 87.5% 95.3%
3tviA01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.53 43.0 3.05e-01 95.8% 53.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 47.0 4.02e-01 100.0% 82.1%
2p7vA00 1.20.120.1370 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 0.51 42.0 3.43e-01 94.4% 70.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3724315 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 54.0 4.14e-01 75.0% 98.7%
D2 medium residues 73-129
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06648.18 best AcMNPV_Ac75 57.9 1.70e-15 98.2% 44.7%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 52.0 4.63e-01 78.9% 58.3%
2r6fA02 1.20.1580.10 Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain 0.69 49.0 3.58e-01 75.4% 88.4%
1fx0A03 1.20.150.20 Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain 0.69 54.0 4.27e-01 91.2% 39.5%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.68 53.0 4.78e-01 86.0% 67.9%
3lxzB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 53.0 4.01e-01 87.7% 36.2%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.66 55.0 4.10e-01 94.7% 36.1%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 55.0 5.51e-01 93.0% 89.7%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.66 56.0 4.47e-01 100.0% 98.4%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.65 53.0 4.71e-01 94.7% 62.5%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 55.0 4.91e-01 93.0% 67.9%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.65 45.0 4.53e-01 96.5% 73.7%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.64 50.0 4.71e-01 86.0% 71.8%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.64 53.0 5.15e-01 93.0% 82.8%
4b3fX01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 56.0 3.48e-01 100.0% 21.8%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.64 53.0 4.84e-01 93.0% 75.3%
3cbuA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 49.0 3.82e-01 87.7% 37.3%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.64 53.0 5.19e-01 93.0% 86.9%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 51.0 4.08e-01 91.2% 43.6%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.63 53.0 4.97e-01 98.2% 97.3%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.63 47.0 3.68e-01 82.5% 57.3%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.63 47.0 4.94e-01 91.2% 94.1%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.63 51.0 5.28e-01 93.0% 98.1%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.61 46.0 4.03e-01 86.0% 54.1%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 51.0 3.96e-01 100.0% 41.7%
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 50.0 4.63e-01 100.0% 94.9%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 50.0 4.58e-01 96.5% 100.0%
1zakA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 49.0 3.33e-01 93.0% 98.2%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 47.0 4.45e-01 91.2% 70.8%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.60 52.0 4.39e-01 100.0% 71.3%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.60 48.0 3.63e-01 93.0% 34.6%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.59 47.0 3.65e-01 93.0% 37.1%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 45.0 4.40e-01 87.7% 80.0%
4cb8A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 46.0 2.76e-01 93.0% 10.5%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.58 45.0 4.45e-01 96.5% 81.5%
3hl1A02 6.10.140.1530 Special › Helix non-globular › Helix Hairpins › 0.57 46.0 4.52e-01 96.5% 92.3%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 48.0 4.60e-01 98.2% 100.0%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 42.0 3.93e-01 91.2% 65.3%
2hcfA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 42.0 4.16e-01 93.0% 100.0%
3nhiA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.54 46.0 3.52e-01 100.0% 92.6%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.54e-01 78.9% 73.2%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.51 41.0 4.24e-01 96.5% 94.5%
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 2.84e-01 100.0% 20.8%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 33.0 3.19e-01 94.7% 56.3%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948631 192.29.1.56 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › YihI 0.79 61.0 6.23e-01 84.2% 85.5%
3620304 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 64.0 5.70e-01 98.2% 62.5%
3718035 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 69.0 6.65e-01 98.2% 95.4%
3198319 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 60.0 3.68e-01 86.0% 15.5%
2485668 7025.1.1.2 alpha bundles › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9_C 0.75 59.0 5.19e-01 86.0% 64.3%
3614837 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 57.0 3.73e-01 86.0% 19.6%
3840952 601.19.1.39 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C 0.74 58.0 5.33e-01 86.0% 72.0%
3196783 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.74 57.0 5.54e-01 86.0% 80.0%
3627610 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.73 53.0 4.47e-01 77.2% 48.4%
3179180 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.73 57.0 3.94e-01 84.2% 25.9%
3260684 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 56.0 5.75e-01 86.0% 87.3%
4493879 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.72 56.0 4.54e-01 86.0% 49.1%
3477418 4992.1.1.12 extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.71 56.0 4.73e-01 86.0% 53.7%
3754639 150.5.1.106 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C 0.70 55.0 4.81e-01 86.0% 63.5%
3204035 1.1.17.4 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.70 55.0 3.37e-01 86.0% 15.3%
3175300 2004.1.1.185 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11,AAA_12 0.70 58.0 3.40e-01 98.2% 17.7%
3177368 3464.1.1.0 extended segments › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E 0.68 53.0 4.03e-01 91.2% 35.0%
3734558 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 60.0 3.22e-01 100.0% 53.8%
3962352 192.29.1.146 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF2231 0.68 55.0 4.17e-01 96.5% 79.7%
4209288 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.68 53.0 4.36e-01 91.2% 89.6%
4985582 102.1.2.10 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage 0.67 57.0 3.57e-01 94.7% 78.1%
3265774 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.66 48.0 3.35e-01 89.5% 21.9%
4211999 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.66 54.0 4.21e-01 93.0% 43.8%
3796175 192.15.1.99 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PF31025 0.66 47.0 4.87e-01 78.9% 83.0%
3879675 3826.1.1.38 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Na_Ca_ex 0.66 58.0 4.24e-01 100.0% 71.6%
4951196 3290.1.1.1 alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto 0.66 48.0 4.36e-01 77.2% 69.3%
3628964 5050.1.1.1 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.65 53.0 3.60e-01 94.7% 49.1%
3279027 150.8.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PPE 0.65 54.0 3.86e-01 94.7% 32.0%
None 0.64 53.0 3.61e-01 100.0% 51.6%
3253225 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.64 48.0 4.33e-01 84.2% 82.4%
3684478 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.64 52.0 4.94e-01 94.7% 94.3%
3257744 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 48.0 3.33e-01 86.0% 27.6%
3250375 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.63 46.0 4.25e-01 78.9% 61.3%
3844040 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.62 44.0 4.25e-01 75.4% 81.5%
3394021 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.62 50.0 4.63e-01 89.5% 81.3%
3583169 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.62 47.0 4.28e-01 86.0% 91.3%
3731064 633.6.1.0 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.61 51.0 4.25e-01 98.2% 83.6%
3734131 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.60 41.0 3.94e-01 71.9% 80.0%
3686004 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.60 51.0 3.42e-01 100.0% 33.6%
3634125 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.59 48.0 4.83e-01 96.5% 95.0%
3909100 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.59 49.0 3.12e-01 94.7% 18.3%
3675725 5057.1.1.28 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › PF27754 0.58 48.0 3.66e-01 93.0% 41.4%
4870082 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 42.0 4.13e-01 86.0% 86.4%
3983493 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.56 35.0 3.71e-01 93.0% 72.0%
4382577 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 45.0 2.88e-01 94.7% 17.6%
3241469 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.53 42.0 4.36e-01 87.7% 96.4%
4968502 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 40.0 4.01e-01 89.5% 100.0%
3925195 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.51 41.0 3.94e-01 87.7% 81.5%