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hypothetical_protein
Euk-VirChaetoceros_protobacilladnavirus_3
hypothetical_protein__YP_004286321__Chaetoceros_protobacilladnavirus_3__2170142
Identity
- Accession:
- YP_004286321 ↗
- Protein ID:
- hypothetical_protein
- Kingdom:
- euk
Quality
62.9
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Arfiviricetes›
Baphyvirales›
Bacilladnaviridae›
Protobacilladnavirus›
Protobacilladnavirus_chaelor
TaxID: 2170142
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 76-346
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25628.2 best | Shotoku_capsid | 306.7 | 3.00e-91 | 100.0% | 78.7% |
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1opoC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 44.0 | 5.56e-01 | 100.0% | 93.3% |
| 6b9tF02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.74 | 24.0 | 3.86e-01 | 98.5% | 72.5% |
| 2oa2A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.74 | 25.0 | 3.80e-01 | 98.9% | 68.6% |
| 3jb8A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 46.0 | 5.55e-01 | 100.0% | 91.4% |
| 1auyB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 41.0 | 4.85e-01 | 100.0% | 77.2% |
| 1e57B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 41.0 | 4.89e-01 | 100.0% | 79.8% |
| 4nwvA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.72 | 43.0 | 5.10e-01 | 100.0% | 84.8% |
| 2tbvA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.72 | 43.0 | 4.24e-01 | 100.0% | 54.9% |
| 4llfD01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.72 | 43.0 | 5.27e-01 | 100.0% | 90.4% |
| 4yrdA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.71 | 25.0 | 3.80e-01 | 99.3% | 72.3% |
| 1v70A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.70 | 23.0 | 3.63e-01 | 99.3% | 72.4% |
| 2ztnA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 45.0 | 5.35e-01 | 100.0% | 92.1% |
| 1novA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 57.0 | 5.40e-01 | 100.0% | 73.1% |
| 2ws9201 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 43.0 | 4.97e-01 | 100.0% | 85.1% |
| 1f8vC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 56.0 | 5.36e-01 | 100.0% | 74.3% |
| 1f2nC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 43.0 | 4.87e-01 | 100.0% | 80.7% |
| 2ws9300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 43.0 | 4.69e-01 | 99.6% | 74.8% |
| 1smvC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 45.0 | 5.00e-01 | 100.0% | 81.5% |
| 2y26A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 38.0 | 4.81e-01 | 99.3% | 90.1% |
| 5aca300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 42.0 | 4.62e-01 | 100.0% | 74.8% |
| 6aj3B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 41.0 | 5.09e-01 | 98.2% | 97.6% |
| 1ng0C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 44.0 | 4.86e-01 | 100.0% | 81.2% |
| 5ewnA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 42.0 | 4.98e-01 | 99.6% | 92.9% |
| 3jciA00 | 2.60.120.950 | Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein | 0.65 | 42.0 | 5.00e-01 | 100.0% | 91.6% |
| 6eiwA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 43.0 | 5.07e-01 | 99.6% | 95.3% |
| 1ohfA02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 59.0 | 5.77e-01 | 100.0% | 88.5% |
| 7pzaA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 23.0 | 3.33e-01 | 97.8% | 68.9% |
| 5c8cB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 44.0 | 4.33e-01 | 100.0% | 65.4% |
| 4dzgA00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 26.0 | 3.92e-01 | 98.5% | 89.4% |
| 1b35A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 44.0 | 4.48e-01 | 100.0% | 75.4% |
| 4oi4C01 | 2.60.120.1030 | Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain | 0.60 | 21.0 | 3.69e-01 | 95.2% | 98.8% |
| 2ws9100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 41.0 | 4.27e-01 | 100.0% | 74.8% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.58 | 26.0 | 3.82e-01 | 98.9% | 93.2% |
| 4dxzA00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 24.0 | 3.59e-01 | 99.3% | 90.1% |
| 2df7A02 | 2.60.120.660 | Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus | 0.57 | 30.0 | 3.95e-01 | 100.0% | 93.6% |
| 4d7yA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 28.0 | 3.92e-01 | 99.6% | 95.4% |
| 1yi9A01 | 2.60.120.310 | Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain | 0.57 | 30.0 | 3.82e-01 | 100.0% | 85.3% |
| 4kq7A02 | 2.60.120.1390 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 | 0.56 | 33.0 | 3.76e-01 | 100.0% | 74.4% |
| 8begA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 31.0 | 3.93e-01 | 96.7% | 91.9% |
| 1jr7A00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.55 | 38.0 | 3.63e-01 | 99.3% | 61.1% |
| 3napC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 4.50e-01 | 100.0% | 83.3% |
| 3cjiA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 40.0 | 4.18e-01 | 100.0% | 81.4% |
| 1wcuA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.52 | 28.0 | 3.62e-01 | 99.6% | 91.9% |
| 1ywhC03 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.52 | 17.0 | 2.87e-01 | 95.9% | 84.1% |
| 1tg7A04 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 29.0 | 3.54e-01 | 100.0% | 84.7% |
| 3uxfA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 29.0 | 3.51e-01 | 98.5% | 84.9% |
| 4cu9A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 32.0 | 3.85e-01 | 98.9% | 96.0% |
| 2c9aA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 29.0 | 3.71e-01 | 98.5% | 95.1% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5053030 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.76 | 24.0 | 4.72e-01 | 98.5% | 100.0% |
| 5067959 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.74 | 25.0 | 3.83e-01 | 98.5% | 70.4% |
| 2862065 | 10.2.1.15 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat | 0.73 | 41.0 | 5.05e-01 | 100.0% | 84.0% |
| 4927710 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.72 | 23.0 | 3.75e-01 | 99.3% | 74.0% |
| 3928463 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.71 | 29.0 | 4.58e-01 | 98.2% | 95.2% |
| 146646 | 10.2.1.30 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › SP2 | 0.70 | 45.0 | 5.28e-01 | 100.0% | 89.6% |
| 1114663 | 10.2.1.22 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 | 0.69 | 56.0 | 5.24e-01 | 100.0% | 68.5% |
| 2099165 | 10.2.1.22 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 | 0.68 | 56.0 | 5.07e-01 | 100.0% | 65.1% |
| 3585921 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.66 | 28.0 | 4.03e-01 | 100.0% | 82.3% |
| 5060870 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.65 | 28.0 | 4.30e-01 | 98.2% | 98.1% |
| 3392335 | 10.32.1.3 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III | 0.65 | 33.0 | 4.34e-01 | 99.3% | 86.0% |
| 3241031 | 10.32.1.72 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD | 0.64 | 28.0 | 4.23e-01 | 98.9% | 94.8% |
| 3469690 | 11.2.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 | 0.64 | 21.0 | 3.05e-01 | 91.1% | 60.8% |
| 4950864 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.63 | 26.0 | 3.86e-01 | 98.9% | 87.3% |
| 150670 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.63 | 26.0 | 3.91e-01 | 98.5% | 88.6% |
| 4106399 | 10.12.1.107 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF27522 | 0.63 | 34.0 | 4.56e-01 | 90.0% | 97.2% |
| 4979173 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.62 | 26.0 | 3.95e-01 | 100.0% | 95.2% |
| 5083968 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 30.0 | 4.27e-01 | 98.2% | 99.2% |
| 3618200 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 26.0 | 3.77e-01 | 98.9% | 87.5% |
| 3296203 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 11.0 | 2.39e-01 | 99.3% | 58.5% |
| 3688403 | 10.32.1.40 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD2 | 0.60 | 26.0 | 3.30e-01 | 95.9% | 64.4% |
| 5006270 | 10.48.1.0 ↗ | beta sandwiches › jelly-roll › Camelysin metallo-endopeptidase-like › Camelysin metallo-endopeptidase-like | 0.57 | 33.0 | 4.09e-01 | 100.0% | 88.8% |
| 3622115 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.57 | 23.0 | 2.95e-01 | 97.4% | 58.2% |
| 3404052 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 30.0 | 3.97e-01 | 98.9% | 94.3% |
| 5025184 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 26.0 | 3.77e-01 | 100.0% | 96.5% |
| 3225961 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.55 | 26.0 | 3.68e-01 | 99.6% | 92.3% |
| 3477632 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 30.0 | 3.76e-01 | 99.6% | 86.9% |
| 4023517 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 28.0 | 3.80e-01 | 99.6% | 94.8% |
| 3480988 | 10.2.1.18 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monooxygen | 0.54 | 29.0 | 3.89e-01 | 99.3% | 97.9% |
| 3221414 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.54 | 28.0 | 2.61e-01 | 100.0% | 36.6% |
| 4418638 | 10.12.1.107 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF27522 | 0.54 | 39.0 | 3.82e-01 | 99.6% | 67.7% |
| 3781122 | 10.32.1.6 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein | 0.53 | 29.0 | 3.52e-01 | 100.0% | 77.8% |
| 3221683 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.53 | 26.0 | 3.55e-01 | 99.3% | 92.3% |
| 3796384 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.52 | 25.0 | 3.61e-01 | 91.5% | 96.8% |
| 4198149 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.52 | 29.0 | 3.54e-01 | 98.2% | 82.4% |
| 3888045 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.52 | 30.0 | 3.53e-01 | 100.0% | 79.5% |
| 4026461 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 24.0 | 3.64e-01 | 95.9% | 100.0% |
| 3628398 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 25.0 | 3.49e-01 | 91.9% | 91.4% |
| 3867662 | 10.1.1.69 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CAND6-7_N | 0.50 | 30.0 | 3.74e-01 | 97.8% | 95.2% |