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hypothetical_protein

Euk-Vir

Apocheima_cinerarium_nucleopolyhedrovirus

hypothetical_protein__YP_006607849__Apocheima_cinerarium_nucleopolyhedrovirus__307461

Identity

Accession:
YP_006607849 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

84.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Apocheima_cinerarium_nucleopolyhedrovirus

TaxID: 307461

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.89 63.0 6.69e-01 73.6% 91.5%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.86 61.0 5.09e-01 73.6% 51.8%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.75 56.0 4.23e-01 79.2% 42.3%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.72 50.0 4.84e-01 73.6% 83.3%
4abxC01 6.10.140.1080 Special › Helix non-globular › Helix Hairpins › 0.72 49.0 4.39e-01 71.7% 94.8%
4mhlA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.71 51.0 3.65e-01 79.2% 53.4%
2a2cA03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.70 50.0 3.70e-01 75.5% 93.5%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 46.0 4.27e-01 71.7% 71.8%
2kp7A01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.68 56.0 5.10e-01 94.3% 77.0%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.68 47.0 4.15e-01 73.6% 54.4%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 46.0 4.17e-01 71.7% 60.3%
4dhiB02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.66 57.0 4.21e-01 100.0% 73.8%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.65 44.0 4.33e-01 73.6% 77.0%
6nhiA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.64 49.0 3.03e-01 86.8% 23.0%
2hyjA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 45.0 4.85e-01 86.8% 87.0%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.63 54.0 4.22e-01 100.0% 87.6%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.63 51.0 4.78e-01 100.0% 90.3%
1dp3A00 1.10.10.450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding 0.61 41.0 4.06e-01 90.6% 67.3%
2r7rA03 1.10.10.1990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Viral RNA-directed RNA polymerase, 4-helical domain 0.58 46.0 4.23e-01 96.2% 67.1%
4ghjB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 50.0 4.49e-01 100.0% 77.6%
2llwA00 1.10.260.100 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.57 38.0 3.59e-01 71.7% 67.6%
3ibyD02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 44.0 3.72e-01 83.0% 82.1%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.56 34.0 3.60e-01 81.1% 66.7%
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 44.0 4.59e-01 96.2% 100.0%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 43.0 2.95e-01 100.0% 84.6%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.33e-01 73.6% 88.5%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4981744 6091.1.1.0 ↗ alpha bundles › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase 0.85 71.0 7.01e-01 88.7% 96.4%
5062156 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.83 69.0 6.81e-01 88.7% 94.5%
5054075 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.81 71.0 6.83e-01 94.3% 93.3%
4981745 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.80 73.0 6.42e-01 100.0% 82.7%
4929286 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.80 73.0 6.72e-01 98.1% 89.2%
5016654 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.80 71.0 6.64e-01 98.1% 92.3%
5060146 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.80 71.0 6.57e-01 96.2% 89.2%
5046413 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.79 70.0 6.92e-01 94.3% 100.0%
5060022 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.79 73.0 6.38e-01 100.0% 80.0%
5060652 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.78 72.0 6.70e-01 100.0% 92.3%
5062153 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.78 71.0 6.85e-01 100.0% 100.0%
4981739 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.78 69.0 6.82e-01 94.3% 100.0%
5059134 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.78 69.0 6.61e-01 96.2% 95.0%
5060803 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.78 66.0 6.51e-01 90.6% 98.2%
3603627 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.78 71.0 6.29e-01 100.0% 80.0%
5068969 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.77 69.0 6.24e-01 96.2% 82.9%
5060982 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.77 71.0 6.25e-01 100.0% 89.3%
5060145 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.77 71.0 6.57e-01 100.0% 90.8%
5068216 632.18.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.77 72.0 6.84e-01 100.0% 100.0%
5059135 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.77 70.0 6.34e-01 100.0% 90.0%
5059274 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.76 68.0 6.34e-01 98.1% 90.8%
4982050 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.74 67.0 6.10e-01 100.0% 94.3%
4935457 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.71 59.0 4.27e-01 98.1% 50.3%
5060030 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.70 58.0 4.11e-01 100.0% 52.4%
4949368 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 43.0 4.30e-01 84.9% 69.1%
3274698 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.61 45.0 2.95e-01 81.1% 18.8%
4479187 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.59 44.0 4.16e-01 88.7% 66.2%
3648991 2492.1.1.39 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DYW_deaminase 0.53 46.0 3.49e-01 98.1% 75.4%
3222137 103.1.1.27 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_7 0.51 36.0 3.66e-01 84.9% 76.4%
D2 medium residues 54-146
PDB
Domain cluster: rep: ORF-89__YP_009001866__Buzura_suppressaria_nucleopolyhedrovirus__74320__D76-165