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hypothetical_protein

Euk-Vir

Chaetoceros_sp._DNA_virus_7

hypothetical_protein__YP_009001775__Chaetoceros_sp._DNA_virus_7__1382995

Identity

Accession:
YP_009001775 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

56.5 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Baphyvirales› Bacilladnaviridae› Protobacilladnavirus› Chaetoceros_sp._DNA_virus_7

TaxID: 1382995

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-125
PDB
D2 high residues 148-209
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l9tA01 1.10.1240.70 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.76 53.0 4.85e-01 79.0% 55.4%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.74 51.0 3.83e-01 71.0% 34.0%
4e21B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.72 62.0 4.85e-01 100.0% 56.9%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.70 54.0 4.37e-01 80.6% 48.2%
6wfqC01 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.70 61.0 4.70e-01 98.4% 81.7%
3k49A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 47.0 2.94e-01 74.2% 16.1%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.67 59.0 4.84e-01 98.4% 95.5%
1lj2A00 1.20.5.970 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein 0.65 53.0 4.41e-01 88.7% 60.4%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.64 54.0 4.83e-01 90.3% 67.5%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.61 48.0 3.50e-01 91.9% 47.8%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.61 55.0 4.04e-01 100.0% 70.1%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.60 53.0 4.35e-01 96.8% 54.1%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.60 48.0 3.84e-01 87.1% 85.8%
2qmaA01 1.20.1650.10 Mainly Alpha › Up-down Bundle › PLP-dependent transferase-like › PLP-dependent transferases 0.60 51.0 4.68e-01 100.0% 82.6%
4exjA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 50.0 4.07e-01 100.0% 72.7%
3j27B00 1.10.8.970 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Flavivirus envelope glycoprotein M-like 0.56 42.0 4.07e-01 82.3% 76.4%
1oxjA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.56 39.0 4.02e-01 77.4% 77.0%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 4.41e-01 83.9% 100.0%
2gicD02 1.10.3610.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein 0.53 43.0 3.19e-01 98.4% 68.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4562953 2004.1.1.43 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 0.79 56.0 3.54e-01 85.5% 16.1%
3168021 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.76 47.0 4.29e-01 98.4% 48.8%
3189168 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 55.0 5.61e-01 80.6% 95.0%
3341254 130.1.1.43 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › DUF3490 0.71 55.0 5.13e-01 82.3% 68.0%
3804077 3722.1.1.3 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › DUF3490 0.71 54.0 5.05e-01 80.6% 66.7%
4043617 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.71 55.0 3.47e-01 82.3% 54.7%
3903553 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.70 50.0 4.02e-01 90.3% 40.0%
4453591 3602.1.1.4 ↗ alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › RRP36 0.70 55.0 4.20e-01 83.9% 60.0%
3303977 632.7.1.54 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › DUF3490 0.69 57.0 4.25e-01 88.7% 45.3%
3869638 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.69 50.0 3.36e-01 87.1% 21.9%
3570680 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 52.0 3.12e-01 87.1% 12.6%
3889743 105.1.1.1 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH 0.67 45.0 3.93e-01 91.9% 45.3%
3858558 4207.1.2.5 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › TEX13 0.67 50.0 4.73e-01 79.0% 66.7%
3563618 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.67 51.0 4.20e-01 93.5% 46.4%
3652408 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.66 49.0 4.32e-01 80.6% 56.8%
3628125 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.66 49.0 4.58e-01 77.4% 86.7%
4042958 152.1.2.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.66 50.0 4.36e-01 95.2% 53.7%
3573035 109.4.1.3370 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PL48 0.65 53.0 4.05e-01 87.1% 40.7%
5010237 150.1.1.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.64 44.0 3.53e-01 74.2% 34.6%
4157100 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.64 54.0 3.36e-01 90.3% 54.7%
3449084 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.64 51.0 4.29e-01 87.1% 55.2%
3889578 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.64 50.0 4.03e-01 87.1% 60.8%
5012157 605.1.1.354 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1 0.64 49.0 4.43e-01 82.3% 62.4%
4058512 3877.1.1.1 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.63 52.0 3.60e-01 93.5% 42.7%
3713494 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.61 50.0 4.98e-01 90.3% 92.3%
3965811 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.61 49.0 4.08e-01 87.1% 61.5%
3389963 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.61 42.0 4.07e-01 72.6% 78.6%
3387205 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.61 52.0 4.55e-01 93.5% 67.8%
4962041 304.55.1.0 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains 0.60 50.0 3.63e-01 100.0% 31.5%
3885341 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 3.43e-01 93.5% 60.0%
5038668 4266.2.1.0 ↗ alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like 0.56 43.0 3.86e-01 85.5% 98.9%
3174086 109.4.1.1782 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RasGEF_N_2, RICTOR_N, RICTOR_M 0.56 48.0 2.83e-01 100.0% 12.0%
4933354 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.55 47.0 3.16e-01 95.2% 45.0%
3191284 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.53 37.0 4.02e-01 74.2% 100.0%