←Back to structures

hypothetical_protein

Euk-Vir

Mamestra_brassicae_multiple_nucleopolyhedrovirus

hypothetical_protein__YP_009011129__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219

Identity

Accession:
YP_009011129 ↗
Protein ID:
hypothetical_protein
Kingdom:
euk

Quality

71.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Mamestra_brassicae_multiple_nucleopolyhedrovirus

TaxID: 78219

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-69
PDB
Domain cluster: rep: hypothetical_protein_AGNV_164__YP_009316174__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591__D4-68
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03804.20 best DUF325 69.8 2.90e-19 100.0% 46.0%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 52.0 5.41e-01 100.0% 81.7%
2ebiA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 52.0 5.23e-01 100.0% 87.9%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.65 53.0 4.93e-01 100.0% 70.9%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 39.0 3.30e-01 86.4% 34.8%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.63 51.0 4.71e-01 100.0% 67.4%
6tqpA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.62 52.0 4.16e-01 100.0% 46.3%
2id3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 50.0 4.05e-01 97.0% 59.9%
1akhB00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 45.0 4.31e-01 100.0% 70.5%
2rg8A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 43.0 3.42e-01 100.0% 34.7%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 49.0 4.02e-01 97.0% 55.3%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.58 43.0 3.40e-01 78.8% 36.6%
4mdvB03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.58 37.0 3.43e-01 100.0% 47.3%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.58 43.0 4.20e-01 90.9% 72.6%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.58 50.0 4.42e-01 100.0% 90.0%
5y6qB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.58 49.0 4.32e-01 100.0% 78.3%
6i2mB02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.57 47.0 4.03e-01 100.0% 54.1%
3pmcA00 1.10.490.70 Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain 0.57 51.0 4.05e-01 100.0% 55.3%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 48.0 4.53e-01 100.0% 80.0%
3hqiA02 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.57 37.0 2.98e-01 81.8% 31.4%
5dckA00 1.10.1200.30 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain 0.56 42.0 4.14e-01 87.9% 78.9%
5haxA01 1.20.58.1780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 44.0 3.03e-01 92.4% 24.3%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 40.0 3.64e-01 77.3% 65.6%
2efjA01 1.10.1200.270 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Methyltransferase, alpha-helical capping domain 0.55 47.0 3.85e-01 100.0% 80.6%
3lcrB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 46.0 3.15e-01 100.0% 59.0%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.55 46.0 3.77e-01 100.0% 55.3%
3c18A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 42.0 3.50e-01 83.3% 77.1%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 44.0 3.89e-01 97.0% 86.2%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.53 44.0 3.75e-01 95.5% 92.2%
2f76X00 1.10.150.490 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Retroviral GAG p10 protein 0.53 41.0 3.72e-01 89.4% 60.0%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 45.0 3.61e-01 100.0% 92.9%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.53 43.0 3.85e-01 93.9% 80.8%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.53 44.0 3.89e-01 97.0% 64.0%
7ep3A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 38.0 2.63e-01 78.8% 66.1%
7xcnM01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.52 44.0 4.18e-01 95.5% 80.8%
3c2bA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 43.0 3.46e-01 100.0% 56.5%
4mlmA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 44.0 3.26e-01 98.5% 99.5%
3ezxA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.52 43.0 3.98e-01 97.0% 73.3%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.52 40.0 3.72e-01 87.9% 96.6%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 43.0 3.46e-01 100.0% 89.0%
7vkcA01 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.51 39.0 3.05e-01 87.9% 61.2%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 39.0 3.84e-01 93.9% 78.7%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 39.0 2.53e-01 83.3% 37.0%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.50 39.0 3.40e-01 87.9% 72.1%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4052372 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.79 57.0 3.76e-01 100.0% 19.2%
3519643 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.73 51.0 4.16e-01 74.2% 47.2%
5070893 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.70 45.0 3.86e-01 77.3% 41.0%
3346039 101.35.1.23 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.70 52.0 5.59e-01 95.5% 100.0%
4342929 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.70 61.0 5.48e-01 100.0% 76.8%
3506491 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.70 61.0 5.36e-01 100.0% 72.0%
4304782 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.69 61.0 5.62e-01 100.0% 77.6%
4407331 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.68 58.0 5.66e-01 100.0% 88.0%
3640877 101.1.2.627 ↗ alpha arrays › HTH › HTH › winged helix domain › Ovate 0.68 51.0 5.45e-01 95.5% 100.0%
5002999 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.67 59.0 5.59e-01 100.0% 83.7%
4479551 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.67 57.0 5.26e-01 100.0% 84.4%
5072566 604.4.1.0 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.67 58.0 5.74e-01 98.5% 95.7%
4241236 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.67 56.0 5.38e-01 100.0% 83.7%
4617287 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.67 56.0 5.20e-01 100.0% 74.4%
4595954 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.66 56.0 5.28e-01 100.0% 78.8%
4436943 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.66 56.0 5.38e-01 100.0% 83.7%
4350523 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.66 56.0 4.99e-01 100.0% 66.0%
3575378 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 5.00e-01 100.0% 69.5%
4371007 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.66 55.0 5.10e-01 100.0% 74.1%
3389549 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.65 55.0 5.06e-01 100.0% 77.8%
4143595 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.63 53.0 4.85e-01 100.0% 71.6%
3700116 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 54.0 4.65e-01 100.0% 61.8%
4954763 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.62 54.0 4.89e-01 100.0% 72.2%
3261803 633.24.1.0 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.62 52.0 4.88e-01 100.0% 92.9%
4037687 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.61 49.0 4.84e-01 100.0% 85.7%
4124891 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.61 52.0 4.68e-01 100.0% 74.7%
4929005 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.60 47.0 3.25e-01 87.9% 89.4%
3922796 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.58 48.0 3.48e-01 93.9% 57.0%
4046399 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.58 47.0 4.42e-01 100.0% 74.1%
3960566 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.58 51.0 4.45e-01 100.0% 69.0%
2671884 601.1.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.57 43.0 3.33e-01 80.3% 82.8%
3521173 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.57 39.0 3.60e-01 90.9% 53.3%
5041878 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 40.0 2.86e-01 89.4% 22.9%
3517599 375.1.9.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.57 42.0 3.41e-01 100.0% 40.8%
3539016 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.56 46.0 4.11e-01 98.5% 75.2%
3620818 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.56 38.0 3.49e-01 72.7% 68.4%
3800925 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.56 38.0 3.46e-01 71.2% 67.4%
5050468 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.55 48.0 3.27e-01 100.0% 40.9%
4004180 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.55 40.0 3.83e-01 78.8% 80.0%
3590947 1141.1.1.0 ↗ alpha arrays › Glycosyl transferase TarS linker domain › Glycosyl transferase TarS linker domain › Glycosyl transferase TarS linker domain 0.55 46.0 3.99e-01 100.0% 67.3%
4653062 604.4.1.0 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.55 45.0 3.94e-01 98.5% 70.9%
4249322 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.54 45.0 4.15e-01 100.0% 73.3%
5044650 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.53 44.0 3.47e-01 98.5% 92.5%
5037329 604.39.1.6 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › QueT 0.53 44.0 3.45e-01 100.0% 55.8%
4858006 191.1.1.11 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_7 0.52 38.0 3.72e-01 81.8% 89.6%
4999825 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.52 41.0 3.70e-01 92.4% 66.0%
5035838 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.51 35.0 3.23e-01 71.2% 70.0%
3703191 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.51 44.0 3.84e-01 100.0% 64.0%
3283697 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.51 40.0 3.48e-01 92.4% 95.7%
3263294 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.50 40.0 3.67e-01 97.0% 93.0%
3471592 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.50 39.0 3.60e-01 87.9% 81.1%
D2 high residues 76-156
PDB