hypothetical_protein

Euk-Vir

Mamestra_brassicae_multiple_nucleopolyhedrovirus

hypothetical_protein__YP_009011176__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219

Identity

73.6 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Mamestra_brassicae_multiple_nucleopolyhedrovirus

TaxID: 78219

View cluster (19 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 87-198

PDB

Domain cluster: rep: hypothetical_protein__YP_009249980__Mocis_latipes_granulovirus__2072024__D101-188

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h20A01	3.30.1490.240	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain	0.65	37.0	4.54e-01	83.0%	92.4%
4kp3C00	1.20.58.1770	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	31.0	3.60e-01	92.9%	72.8%
3tcaA01	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.53	36.0	4.01e-01	98.2%	87.8%
2faoA01	3.90.920.10	Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain	0.51	41.0	3.13e-01	88.4%	75.9%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3704338	2004.1.1.26 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin	0.54	48.0	4.02e-01	100.0%	74.6%
3743759	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.52	41.0	4.15e-01	86.6%	93.9%

D2 medium residues 11-72

PDB

Domain cluster: rep: hypothetical_protein_KM622_gp095__YP_010086513__Spodoptera_exempta_nucleopolyhedrovirus__1242863__D8-72

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ptfB02	1.20.58.290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121.	0.73	53.0	5.53e-01	75.8%	91.2%
7qocA01	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.62	51.0	3.76e-01	96.8%	64.7%
1fafA00	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.60	41.0	3.82e-01	72.6%	64.6%
7wu8B01	1.20.1160.20	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) ›	0.58	47.0	4.42e-01	95.2%	81.0%
4ui9Y03	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.57	46.0	4.33e-01	95.2%	77.5%
2kj5A00	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.56	48.0	3.96e-01	98.4%	62.1%
3dfgA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	35.0	3.94e-01	74.2%	85.4%
1p77A01	3.40.50.10860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1	0.51	43.0	3.38e-01	100.0%	63.1%
2pjqA01	1.10.472.50	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like	0.51	36.0	3.29e-01	77.4%	93.3%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4468764	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.73	64.0	5.18e-01	96.8%	65.2%
2738659	109.4.1.3589 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, TPR_14, TPR_16, PF29376	0.62	53.0	3.56e-01	100.0%	26.0%
4978244	102.1.1.11 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4	0.57	43.0	3.76e-01	85.5%	85.7%
4624742	1002.1.1.1 ↗	alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB	0.57	39.0	3.34e-01	74.2%	71.3%
3245538	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.56	38.0	3.29e-01	72.6%	77.1%
4289952	4959.1.1.1 ↗	a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3	0.53	37.0	2.80e-01	75.8%	58.2%
None	—		0.53	45.0	2.77e-01	100.0%	33.3%